EY675182

Overview
NameEY675182
Unique NameEY675182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675182_ssr895 microsatellite EY675182_ssr895:895..906. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY675182 vs. ExPASy Swiss-Prot
Match: FA2H_RAT (Fatty acid 2-hydroxylase OS=Rattus norvegicus GN=Fa2h PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.200e-13
Identity = 36/72 (50.00%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    1 PRVRTPALYRGILLGYVMYDVTPYYTHHGKPSKGIIL-RLKRFHMNHHFRIRDKGFGISSSLWDIVFGTLPP 213
            P      L+ G LLGYV+YD+T YY H G P KG  L  +K  H+ HHF  +  GFGIS+ LWD  F TL P
Sbjct:  293 PEAVAGILFAGGLLGYVLYDMTHYYLHFGSPHKGSYLYNMKAHHVKHHFEYQKSGFGISTKLWDYFFHTLIP 364          
BLAST of EY675182 vs. ExPASy Swiss-Prot
Match: FA2H_MOUSE (Fatty acid 2-hydroxylase OS=Mus musculus GN=Fa2h PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.381e-12
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   22 LYRGILLGYVMYDVTPYYTHHGKPSKGIIL-RLKRFHMNHHFRIRDKGFGISSSLWDIVFGTLPP 213
            ++ G LLGYV+YD+T YY H G P KG  L  +K  H+ HHF  +  GFGIS+ LWD  F TL P
Sbjct:  300 IFAGGLLGYVLYDMTHYYLHFGSPHKGSYLYNMKAHHVKHHFEYQKSGFGISTKLWDYFFHTLIP 364          
BLAST of EY675182 vs. ExPASy Swiss-Prot
Match: FA2H_HUMAN (Fatty acid 2-hydroxylase OS=Homo sapiens GN=FA2H PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.804e-12
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   22 LYRGILLGYVMYDVTPYYTHHGKPSKGIIL-RLKRFHMNHHFRIRDKGFGISSSLWDIVFGTLPP 213
            ++ G LLGYV+YD+T YY H G P KG  L  LK  H+ HHF  +  GFGIS+ LWD  F TL P
Sbjct:  300 VFAGGLLGYVLYDMTHYYLHFGSPHKGSYLYSLKAHHVKHHFAHQKSGFGISTKLWDYCFHTLTP 364          
BLAST of EY675182 vs. ExPASy Swiss-Prot
Match: FA2H_MACFA (Fatty acid 2-hydroxylase OS=Macaca fascicularis GN=FA2H PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.249e-12
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   22 LYRGILLGYVMYDVTPYYTHHGKPSKGIIL-RLKRFHMNHHFRIRDKGFGISSSLWDIVFGTLPP 213
            ++ G LLGYV+YD+T YY H G P +G  L  LK  H+ HHF  +  GFGIS+ LWD  F TL P
Sbjct:  300 VFAGGLLGYVLYDMTHYYLHFGSPHRGSYLYNLKAHHVKHHFAHQKSGFGISTKLWDYCFHTLIP 364          
The following BLAST results are available for this feature:
BLAST of EY675182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FA2H_RAT6.200e-1350.00Fatty acid 2-hydroxylase OS=Rattus norvegicus GN=F... [more]
FA2H_MOUSE1.381e-1252.31Fatty acid 2-hydroxylase OS=Mus musculus GN=Fa2h P... [more]
FA2H_HUMAN1.804e-1253.85Fatty acid 2-hydroxylase OS=Homo sapiens GN=FA2H P... [more]
FA2H_MACFA5.249e-1252.31Fatty acid 2-hydroxylase OS=Macaca fascicularis GN... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-007-C01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675182 ID=EY675182; Name=EY675182; organism=Citrus sinensis; type=EST; length=907bp
CCACGCGTCCGCACTCCTGCACTATACCGAGGCATTTTGCTGGGATATGT
AATGTATGATGTTACTCCTTACTACACACATCACGGGAAGCCATCGAAAG
GAATCATTCTGCGGCTGAAGAGATTTCACATGAATCATCACTTCAGAATT
CGGGACAAAGGATTTGGAATCTCTTCGTCTTTATGGGACATTGTGTTTGG
AACGCTTCCTCCTGCAAAAGCGGCTAAAGCATAGAAGATGTTACTGGCTC
GCGTTTAATTGAATAAAANATATTGATCACGTTGTGAAATTGTTCCGAAT
AAAATCTGCGCGATGAGAGAAAGGGAGGCATGGAACAAGAATAGGGGAAC
ATGACAGTGAAATAAAGATAAATAAAAAAGAGGAGAAGAAGTAAACAATG
TAGAAAACAAAAAAAAAAAAGAAGAAAAGAAAAAAAAAAAAAGGAACAGA
AGAAGAAAAGAAGAGAAAAAGAAAAAAGAGAGGCAAAAGCGAAACAAACA
AAAACAAAAAAAAACAAGAAAGGGAGAAACAAAGAAAACGAAGAACGAAA
CAAGGAGACAGACAGAAGCAAGGAAAAGAGGGAGAAAGGGAGAAAAAGAA
AGAACGCGAAGAAGGAAGAAGAGAGAGGAAAAAAAGAGAGAGGAAGGAAG
AGAAAAGAAGCAAAAAGAAAGACGAGAAGCAAGGACAGAAGAAAAGAAAA
ACGAAAAAAAGAAGAGGAAACAAAAAGGAAGGAGAAGGGAAAAAAGAAAG
GAGGACAGAAGGGGCAAAGAGAGGAGAAAAAAAAATGCGAGGAAAAGGGA
AGAAGGAGGAAGAAAAGACAGAGAAAAGACAAAGGGAAGAAAAAACAAAG
AAAGAAGAAAAAGAAAGAGAAGGGCAAAAAAAAGAAAGGAAAAGAAGAAA
GAAAGAG
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