EY675146

Overview
NameEY675146
Unique NameEY675146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8524 contig Csv1_Contig8524:1..398. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY675146 vs. ExPASy Swiss-Prot
Match: RECJ_ECOLI (Single-stranded-DNA-specific exonuclease recJ OS=Escherichia coli (strain K12) GN=recJ PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.721e-20
Identity = 42/84 (50.00%), Postives = 65/84 (77.38%), Query Frame = -2
Query:   44 ELPPLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLLVTALEQRQRILIVGDFDADGATASTVGTVGLRLLGAAHVD 295
            ELPPLL RLYA+RGV+S  EL++S+  ++P+QQL G++ AV++L  A  +  RI++VGDFDADGAT++ +  + +R LG +++D
Sbjct:   21 ELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNID 104          
BLAST of EY675146 vs. ExPASy Swiss-Prot
Match: RECJ_SALTY (Single-stranded-DNA-specific exonuclease recJ OS=Salmonella typhimurium GN=recJ PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.139e-19
Identity = 43/83 (51.81%), Postives = 64/83 (77.11%), Query Frame = -2
Query:   47 ELPPLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLLVTALEQRQRILIVGDFDADGATASTVGTVGLRLLGAAHV 295
            +LPPLL RLYA+RGV+S  EL++S+  ++P+QQL GID AV++L  A  +  RI++VGDFDADGAT++ +  +G+R LG  ++
Sbjct:   21 DLPPLLRRLYASRGVRSARELERSVKGMLPWQQLSGIDNAVEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALGCDNI 103          
BLAST of EY675146 vs. ExPASy Swiss-Prot
Match: RECJ_HAEIN (Single-stranded-DNA-specific exonuclease recJ OS=Haemophilus influenzae GN=recJ PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.850e-16
Identity = 42/81 (51.85%), Postives = 59/81 (72.84%), Query Frame = -2
Query:   44 PLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLLVTALEQRQRILIVGDFDADGATASTVGTVGLRLLGAAHVD 286
            PLL RLY AR +Q+  ELD++L  ++   QL GI+ AV+LLV A + +Q+I+IVGDFDADGAT++ +  + LR LG + VD
Sbjct:   20 PLLDRLYRARHIQNTKELDRTLKSMLNPNQLYGIEQAVNLLVEAYQPQQKIVIVGDFDADGATSTALSVLALRQLGFSDVD 100          
BLAST of EY675146 vs. ExPASy Swiss-Prot
Match: RECJ_DICD3 (Single-stranded-DNA-specific exonuclease recJ OS=Dickeya dadantii (strain 3937) GN=recJ PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.340e-14
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = -2
Query:   47 LPPLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLLVTALEQRQRILIVGDFDADGATASTVGTVGLRLLGAAHV 292
            LP LL RLYA RGV+   EL++SL  L+ Y+ L GI  AV++L  AL   +RI+IVGDFDAD AT++ +  + LR + A  V
Sbjct:   21 LPALLRRLYAQRGVRQMQELERSLRGLLDYRLLGGITQAVEVLRQALADNRRIVIVGDFDADRATSTALTVLALRSMAAREV 102          
The following BLAST results are available for this feature:
BLAST of EY675146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RECJ_ECOLI8.721e-2050.00Single-stranded-DNA-specific exonuclease recJ OS=E... [more]
RECJ_SALTY1.139e-1951.81Single-stranded-DNA-specific exonuclease recJ OS=S... [more]
RECJ_HAEIN5.850e-1651.85Single-stranded-DNA-specific exonuclease recJ OS=H... [more]
RECJ_DICD39.340e-1450.00Single-stranded-DNA-specific exonuclease recJ OS=D... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-F11-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675146 ID=EY675146; Name=EY675146; organism=Citrus sinensis; type=EST; length=398bp
TCGTGGGGCTTGACGGGCGCTGCAGTACGGTCCGGATTCCCGGGTCGACG
TGGGCGGCACCCAACAAACGCAGGCCCACGGTGCCCACGGTGCTGGCGGT
GGCGCCATCGGCGTCGAAGTCACCCACGATCAGTATCCGCTGGCGCTGTT
CCAGAGCCGTCACCAGCAGGTCCACGGCGGCATCGATGCCCTTGAGCTGC
TGATACGGAATCAGCCGGGCCAGGCTTTTATCCAGCTCGGCTTCCGATTG
CACCCCGCGTGCGGCGTAGAGACGGGTCAACAACGGTGGCAATTCACCGA
GGAATGGCAGGACGGCGGGCAACGGGCGAGGATCGATACGCATGGGGTGA
CGGAAGCTTCTCTTTAATGTTGAAAATTAGCGGTGATCCCTTGTAGGA
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