EY675138

Overview
NameEY675138
Unique NameEY675138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1017
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675138_ssr771 microsatellite EY675138_ssr771:771..782. BLAST: Citrus ESTs to Prunus persica proteins V1
EY675138_ssr731 microsatellite EY675138_ssr731:731..746. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY675138 vs. ExPASy Swiss-Prot
Match: DHB4_HUMAN (Peroxisomal multifunctional enzyme type 2 OS=Homo sapiens GN=HSD17B4 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.620e-12
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 3 
Query:  108 LSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAI-DLPGLQHDPRLLLHGQQYMELYKPFPSSASIR 410
            + QKLP  ++ YTE +A +YALGVGA  +D  D   LK++Y   G      LPTF  +   +    G + ++PGL  +   +LHG+QY+ELYKP P +  ++
Sbjct:  328 IGQKLPPFSYAYTELEAIMYALGVGASIKDPKD---LKFIYE--GSSDFSCLPTFGVIIGQKSMMGGGLAEIPGLSINFAKVLHGEQYLELYKPLPRAGKLK 424
[Close]
BLAST of EY675138 vs. ExPASy Swiss-Prot
Match: DHB4_RAT (Peroxisomal multifunctional enzyme type 2 OS=Rattus norvegicus GN=Hsd17b4 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 5.211e-11
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 3 
Query:  105 LLSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAI-DLPGLQHDPRLLLHGQQYMELYKPFPSSASIR 410
            ++  KLP  + +YTE    +YALGVGA  ++  D   LK+VY   G      LPTF  + + +   SG + ++PGL  +   +LHG+QY+ELYKP P S  ++
Sbjct:  326 VVGHKLPSFSSSYTELQCIMYALGVGASVKNPKD---LKFVYE--GSADFSCLPTFGVIVAQKSLMSGGLAEVPGLSINFAKVLHGEQYLELYKPLPRSGELK 423
[Close]
BLAST of EY675138 vs. ExPASy Swiss-Prot
Match: DHB4_MOUSE (Peroxisomal multifunctional enzyme type 2 OS=Mus musculus GN=Hsd17b4 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 8.888e-11
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 3 
Query:  108 LSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAI-DLPGLQHDPRLLLHGQQYMELYKPFPSSASIR 410
            +  KLP  + +YTE  + +YALGVGA  ++  D   LK+VY   G      LPTF  + + +   +G + ++PGL  +    LHG+QY+ELYKP P S  ++
Sbjct:  327 VGHKLPSFSSSYTELQSIMYALGVGASVKNPKD---LKFVYE--GSADFSCLPTFGVIVAQKSMMNGGLAEVPGLSFNFAKALHGEQYLELYKPLPRSGELK 423
The following BLAST results are available for this feature:
BLAST of EY675138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DHB4_HUMAN1.620e-1239.22Peroxisomal multifunctional enzyme type 2 OS=Homo ... [more]
DHB4_RAT5.211e-1138.83Peroxisomal multifunctional enzyme type 2 OS=Rattu... [more]
DHB4_MOUSE8.888e-1138.24Peroxisomal multifunctional enzyme type 2 OS=Mus m... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-F01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675138 ID=EY675138; Name=EY675138; organism=Citrus sinensis; type=EST; length=1017bp
AGTGAATTCACTTTTGCCAACGCTTTTGAGCAGAAATTGAAAAGCTACTT
TCAATCTTAAGAGGGGCTTCCATGGCGAAAAGTTCAGGTATCAATCCAGA
GCTCCTCCTCTCTCAAAAACTCCCCGAGAAGACATTCACTTACACTGAAA
GAGATGCTGCGATCTATGCCTTGGGTGTTGGAGCGTGTGGACGGGATGCT
GTGGATGCTGATGAGCTCAAATATGTGTATCATGAAAATGGGCAGCAGTT
CATCCAGGTCTTGCCCACATTTTCTGCTTTGTTTTCATTTGAATTGGAGC
CAAGTGGTGCCATAGATCTTCCAGGACTGCAACATGATCCACGACTTTTG
CTGCATGGACAACAATACATGGAACTGTATAAGCCATTTCCTTCTAGCGC
TTCTATACGAGATGGAAGCATGTATTGCCAGATTGGCTGATAAGGGTAAA
GCTGCTATCCTTGAAATTGAAACAAAAGTTACAATGCAAAAATCGGTGAA
ATGGTTAAGAAGAAACGGATGAAGGACTTTCGGGGGGGGGCTGGAGAATA
TTCAAATTCATCACAACATTTTTCAAAAACGAAGAAAAAACAAGGCCTGT
ATAGGGTGCGGAAAAATGGGAAAGGGAAACTATATGAAGAAAAAAGAGCA
TGAGCACGAACGAGAAACAAATTAGATACAAGGCCAAAGAAAAAAAAAAA
AAAAAAGAGAGAAAAGAAAAAAAAAAAAGCAGAAAGAAAGAAAGAAACGA
ACAAAACAAAAAAAAAGAGGGAAGAAGAAGAAAAAAAGAAGAGAAGAAAT
ACGGAAAAAAAAGGAAAAACAACGAACAAGACAGAGGAAAAAAACGAAAA
AAACGAAAAAACAAAGTAAACCGAGAAAATAGTAGTGACGGGAGGGAAAA
CTAATGAAATGGAGAAAAAGGAGCAAAAAAAGAAAAAGAGAAGACGACAA
AGAGGAAGAGAGAAGGAAGAGGCAAGAGAGAACCAAGAACAGAGATAGAA
ATATAGAAGACAGAATA
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