EY675132

Overview
NameEY675132
Unique NameEY675132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1026
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 2.178e-73
Identity = 134/201 (66.67%), Postives = 163/201 (81.09%), Query Frame = 2
Query:   89 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWG 691
            N S+   DPEI+DL+ KEK+RQ  G+ELIASENFTS AV+E++GS  TNKY+EG+PG RYYGGNE +D++ENLC  RAL+TF+L+P +WGVNVQPYSGS ANFAA+T +L+PHDRIMGLDLPSGGHLTHGY T   KKISATSI  ES+PY+VN  TGY+DYNK+E  A  FR KL+I G SA PREW+Y + +  A+K G
Sbjct:   31 NRSVSESDPEIYDLMMKEKQRQFTGLELIASENFTSRAVMESIGSCFTNKYAEGLPGARYYGGNEVVDQLENLCIKRALETFNLNPEEWGVNVQPYSGSTANFAAFTGLLKPHDRIMGLDLPSGGHLTHGYQTD-KKKISATSIFFESMPYQVN-ETGYVDYNKMEANAALFRPKLLIAGASAYPREWDYERMRKIADKHG 229          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 4.542e-71
Identity = 145/261 (55.56%), Postives = 179/261 (68.58%), Query Frame = 2
Query:   86 GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGG----PFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQPPTPKKLGGGPRGGDRFLPPGK 856
            GN+ L+ VD EI +L+ +EK RQ +G+ELIASENFTS AV+EALGS  TNKY+EG PG+RYYGG E +DE+E LC+ RAL+ F LD ++WGVNVQPYSGSPANFA YTA+L PHDRIMGLDLPSGGHLTHGY T   KKISA+SI  ES+PY++ +  G IDY +LEE AL F+ KLII G SA PREW+Y + +  A+K G       A   GL +   +  P +   ++ +        T  K   GPR G  F   GK
Sbjct:    6 GNTPLKEVDNEIFELMNREKDRQFKGLELIASENFTSRAVMEALGSHFTNKYAEGYPGSRYYGGTEVVDELETLCQKRALKAFRLDESKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGYQTD-KKKISASSIFFESMPYQIGAD-GLIDYQRLEENALLFKPKLIISGASAYPREWDYKRMRAIADKVGAYLMCDMAHYSGLVAAQLLDSPFDYCDVVTS--------TTHKTLRGPRSGIIFFRRGK 256          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.726e-70
Identity = 150/293 (51.19%), Postives = 184/293 (62.80%), Query Frame = 2
Query:   23 FSFSVNPENGKKEKMDPVNEWG---NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQP--------PTPKKLGGGPRGGDRFLPPGKGPLN 868
            +S S  P     EK  P   W    N+ LE VDPEI D+IE EK RQ +G+ELI SENFTS +V++A+GS +TNKYSEG PG RYYGGNE+ID  E LC+ RAL+ F LDP +WGVNVQP SGSPANF  YTA+L+ HDRIM LDLP GGHL+HGY T   KKISA SI  E++PY++N STGYIDY++LE+ A  FR KLI+ G SA  R ++YA+ +   +K      + I L  MA ++G       L     IP P         T  K   GPRG   F   G   +N
Sbjct:   28 YSMSSLPSEAVYEKERPGVTWPKQLNAPLEVVDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDK-----QKAIMLADMAHISG-------LVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVN 307          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.845e-70
Identity = 145/287 (50.52%), Postives = 184/287 (64.11%), Query Frame = 2
Query:   41 PENGKKEKMDPVNEWG---NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQP--------PTPKKLGGGPRGGDRFLPPGKGPLN 868
            P+    +K +P   W    NS LE +DPEI D+IE EK RQ +G+ELI SENFTS +V++A+GS +TNKYSEG PG RYYGGNE+ID  E LC+ RAL+ F LDP +WGVNVQP SGSP+NF  YTA+L+PHDRIM LDLP GGHL+HGY T   KKISA SI  E++PY+++ STGYIDY++LE+ A  FR KLI+ G SA  R ++YA+ +   +K      + + L  MA ++G       L     IP P         T  K   GPRG   F   G   +N
Sbjct:   34 PDEAVYDKENPRVTWPKQLNSPLEVIDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDK-----QKAVLLADMAHISG-------LVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVN 307          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 1.237e-68
Identity = 148/293 (50.51%), Postives = 182/293 (62.12%), Query Frame = 2
Query:   23 FSFSVNPENGKKEKMDPVNEWG---NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQP--------PTPKKLGGGPRGGDRFLPPGKGPLN 868
            +S S  P     EK  P   W    N+ LE  DPEI D+IE EK RQ +G+ELI SENFTS +V++A+GS +TNKYSEG PG RYYGGNE+ID  E LC+ RAL+ F LD  +WGVNVQP SGSPANF  YTA+L+ HDRIM LDLP GGHL+HGY T   KKISA SI  E++PY++N STGYIDY++LE+ A  FR KLI+ G SA  R ++YA+ +   +K      + I L  MA ++G       L     IP P         T  K   GPRG   F   G   +N
Sbjct:   28 YSMSSLPSEAVYEKERPGVTWPKQLNAPLEVGDPEIADIIELEKARQWKGLELILSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDAAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDK-----QKAILLADMAHISG-------LVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEVN 307          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 1.237e-68
Identity = 139/262 (53.05%), Postives = 176/262 (67.18%), Query Frame = 2
Query:   89 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAG--PGNCQPLLNTGPQIPQPPTPKKLGGGPRGGDRFLPPGKGPLN 868
            N+ LE VDPEI D+IE EK RQ +G+ELI SENFTS +V++A+GS +TNKYSEG PG RYYGGNE+ID  E LC+ RAL+ F LDP +WGVNVQP SGSPANF  YTA+L+PH+RIM LDLP GGHL+HGY T   KKISA SI  E++PY+++ STGYIDY+++E+ A  FR KLI+ G SA  R ++YA+ +    K      + + L  MA ++G    N  P       +    T K L  GPRG   F   G   +N
Sbjct:   52 NAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAYARLYDYARIRKVCNK-----QKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSL-RGPRGAMIFFRKGVKEIN 306          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 3.599e-68
Identity = 141/268 (52.61%), Postives = 175/268 (65.30%), Query Frame = 2
Query:   89 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWGGPFARGIGLKSMAFVAGPGNCQPLLNTGPQIPQP--------PTPKKLGGGPRGGDRFLPPGKGPLN 868
            N+ LE VDPEI D+IE EK RQ +G+ELI SENFTS +V++A+GS +TNKYSEG PG RYYGGNE+ID  E LC+ RAL+ F LDP +WGVNVQP SGSPANF  YTA+L+PH+RIM LDLP GGHL+HGY T   KKISA SI  E++PY+++ STGYIDY++LE+ A  FR KLI+ G SA  R ++Y + +    K      + I L  MA ++G       L     IP P         T  K   GPRG   F   G   +N
Sbjct:   53 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYDRIRKVCNK-----QKAILLADMAHISG-------LVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGVKEVN 307          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 257.299 bits (656), Expect = 1.047e-67
Identity = 129/195 (66.15%), Postives = 149/195 (76.41%), Query Frame = 2
Query:   86 GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQ 670
            G  SL   DPE+ +L+++EK RQCRG+ELIASENF S A +EALGS L NKYSEG PG RYYGG E +DEIE LC+ RAL+ F LDP QWGVNVQPYSGSPAN A YTA+L+PHDRIMGLDLP GGHLTHG Y S  K+ISATSI  ES+PYK+N  TG IDYN+L   A  FR +LII G SA  R  +YA+ +
Sbjct:   45 GQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHG-YMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMR 238          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 3.047e-67
Identity = 129/198 (65.15%), Postives = 151/198 (76.26%), Query Frame = 2
Query:   98 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWG 691
            L+  D E++++I+KE  RQ  G+ELIASENF S AV+EALGS L NKYSEG PG RYYGG EFIDE+E LC+ RALQ + LDP  WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP GGHLTHG+ T   KKISATSI  ES+PYKVN  TGYI+Y++LEE A  F  KLII G S   R  EYA+ +  A++ G
Sbjct:   26 LKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTD-KKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLEYARLRKIADENG 222          
BLAST of EY675132 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.979e-67
Identity = 128/198 (64.65%), Postives = 151/198 (76.26%), Query Frame = 2
Query:   98 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSILLESLPYKVNSSTGYIDYNKLEEKALDFRAKLIICGGSA*PREWEYAKFQTGAEKWG 691
            L+  D E++++I+KE  RQ  G+EL ASENF S AV+EALGS L NKYSEG PG RYYGG EFIDE+E LC+ RALQ + LDP  WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP GGHLTHG+ T G KKISATSI  ES+PYKVN  TGYI+Y++LEE A  F  KLII G S   R  +YA+ +  A++ G
Sbjct:   26 LKDSDVEVYNIIKKESNRQRVGLELFASENFASQAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMT-GKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLDYARLRKIADENG 222          
The following BLAST results are available for this feature:
BLAST of EY675132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC2_DICDI2.178e-7366.67Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYC1_DICDI4.542e-7155.56Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYM_FLAPR1.726e-7051.19Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYM_PEA3.845e-7050.52Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYN_FLAPR1.237e-6850.51Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_ARATH1.237e-6853.05Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_SOLTU3.599e-6852.61Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_HUMAN1.047e-6766.15Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_HUMAN3.047e-6765.15Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYC_PONAB3.979e-6764.65Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-E06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675132 ID=EY675132; Name=EY675132; organism=Citrus sinensis; type=EST; length=1026bp
CACGCGTCCGCATTTTCCCTTTTTTTCCTTTTCAGTGAATCCAGAAAACG
GAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATCTCTT
GAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGCGCCG
ACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCCTTCG
CCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGAGGGA
ATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGATCGA
GAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCCACCC
AGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTTCGCC
GCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGGACTT
GCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGGAAAA
AGATATCGGCGACTTCGATTTTACTCGAGAGCTTGCCGTACAAGGTGAAT
TCGAGTACTGGGTATATTGATTACAATAAGTTGGAGGAGAAAGCGTTGGA
TTTTAGGGCGAAGTTGATCATTTGCGGGGGGAGTGCGTAACCAAGGGAAT
GGGAATATGCCAAATTCCAAACTGGTGCTGAAAAGTGGGGGGGCCCTTTT
GCTCGGGGGATAGGGCTCAAATCAATGGCCTTTGTTGCTGGCCCAGGAAA
CTGCCAACCCCTTTTGAATACTGGTCCCCAAATCCCCCAACCCCCAACCC
CAAAAAAACTTGGGGGGGGCCCCAGGGGGGGGGATAGATTTCTTCCACCG
GGAAAGGGGCCCCTAAACACCCCCCAAAAAAAGGGGCCCAACCCAAAGGG
GGGGGGCGGGTTTTTATACTTTTTAAAAAAAAAAAAAAAATAAATTTTTT
TTTGGTTGTTTCCTCCCCCCCCCCCCCCCCTCTTCAGGAGGGGGGGGGTG
CCTCCTCCCCCACACACACCCCCCAC
back to top