EY675126

Overview
NameEY675126
Unique NameEY675126
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675126_ssr658 microsatellite EY675126_ssr658:658..667. BLAST: Citrus ESTs to Prunus persica proteins V1
EY675126_ssr804 microsatellite EY675126_ssr804:804..819. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY675126 vs. ExPASy Swiss-Prot
Match: RIR1_ARATH (Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana GN=RNR1 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.911e-41
Identity = 82/103 (79.61%), Postives = 90/103 (87.38%), Query Frame = 3 
Query:   27 NRFFDFEKLAHDKAIVTENLNKIIDVNYYPVETARPSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKNIFETIYYHALKTSSEIAAKEGPYETYHNDP 335
            NR+FDFEKLA   A VT NLNKIIDVNYYPVETA+ SN+RHRPIGIGVQGLAD FILLGM F+SPEAQQLNK+IFETIYYHALK S+E+AA+ GPYETY   P
Sbjct:  477 NRYFDFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSP 579
[Close]
BLAST of EY675126 vs. ExPASy Swiss-Prot
Match: RIR1_MOUSE (Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus GN=Rrm1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.051e-31
Identity = 66/100 (66.00%), Postives = 75/100 (75.00%), Query Frame = 3 
Query:   36 FDFEKLAHDKAIVTENLNKIIDVNYYPVETARPSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKNIFETIYYHALKTSSEIAAKEGPYETYHNDP 335
            +DFEKLA    ++  NLNKIID+NYYP+  A  SN RHRPIGIGVQGLAD FIL+   FESPEAQ LNK IFETIYY AL+ S E+A + GPYETY   P
Sbjct:  461 YDFEKLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCELAKEYGPYETYEGSP 560
[Close]
BLAST of EY675126 vs. ExPASy Swiss-Prot
Match: RIR1_DANRE (Ribonucleoside-diphosphate reductase large subunit OS=Danio rerio GN=rrm1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.897e-31
Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 3 
Query:   30 RFFDFEKLAHDKAIVTENLNKIIDVNYYPVETARPSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKNIFETIYYHALKTSSEIAAKEGPYETYHNDP 335
            R FDF+KLA    ++ +NLNKIID+NYYPV+ A  SN RHRPIGIGVQGLAD FIL+   FES EAQ LN  IFETIYY AL++S E+AA+ GPY+TY   P
Sbjct:  459 RTFDFQKLASVTKVIVKNLNKIIDINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFESTEAQLLNTQIFETIYYAALESSCELAAEYGPYQTYAGCP 560
[Close]
BLAST of EY675126 vs. ExPASy Swiss-Prot
Match: RIR1_CAEEL (Ribonucleoside-diphosphate reductase large subunit OS=Caenorhabditis elegans GN=rnr-1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.162e-30
Identity = 65/100 (65.00%), Postives = 74/100 (74.00%), Query Frame = 3 
Query:   36 FDFEKLAHDKAIVTENLNKIIDVNYYPVETARPSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKNIFETIYYHALKTSSEIAAKEGPYETYHNDP 335
            FDF KLA    ++T NLNKIIDVNYYPVE AR SN+RHRPIG+GVQGLAD F+L+   F S EA+ LNK IFETIYY AL+ S E+A   GPY TY   P
Sbjct:  467 FDFVKLAEVTKVITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSAEARDLNKRIFETIYYAALEASCELAELNGPYSTYEGSP 566
[Close]
BLAST of EY675126 vs. ExPASy Swiss-Prot
Match: RIR1_PONAB (Ribonucleoside-diphosphate reductase large subunit OS=Pongo abelii GN=RRM1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.589e-30
Identity = 65/100 (65.00%), Postives = 75/100 (75.00%), Query Frame = 3 
Query:   36 FDFEKLAHDKAIVTENLNKIIDVNYYPVETARPSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKNIFETIYYHALKTSSEIAAKEGPYETYHNDP 335
            +DF+KLA    +V  NLNKIID+NYYPV  A  SN RHRPIGIGVQGLAD FIL+   FES EAQ LNK IFETIYY AL+ S ++A ++GPYETY   P
Sbjct:  461 YDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSP 560
[Close]
BLAST of EY675126 vs. ExPASy Swiss-Prot
Match: RIR1_HUMAN (Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens GN=RRM1 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.589e-30
Identity = 65/100 (65.00%), Postives = 75/100 (75.00%), Query Frame = 3 
Query:   36 FDFEKLAHDKAIVTENLNKIIDVNYYPVETARPSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKNIFETIYYHALKTSSEIAAKEGPYETYHNDP 335
            +DF+KLA    +V  NLNKIID+NYYPV  A  SN RHRPIGIGVQGLAD FIL+   FES EAQ LNK IFETIYY AL+ S ++A ++GPYETY   P
Sbjct:  461 YDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSP 560
[Close]
BLAST of EY675126 vs. ExPASy Swiss-Prot
Match: RIR1_VARV (Ribonucleoside-diphosphate reductase large subunit OS=Variola virus GN=I4L PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.285e-29
Identity = 64/96 (66.67%), Postives = 72/96 (75.00%), Query Frame = 3 
Query:   36 FDFEKLAHDKAIVTENLNKIIDVNYYPVETARPSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKNIFETIYYHALKTSSEIAAKEGPYETY 323
            FDF KL     ++  NLNKIID+NYYP+  A  SN RHRPIGIGVQGLAD FILL   F+S EAQ LNK IFETIYY AL+ S E+A KEGPY+TY
Sbjct:  460 FDFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKEGPYDTY 555
[Close]
BLAST of EY675126 vs. ExPASy Swiss-Prot
Match: RIR1_VACCW (Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia virus (strain Western Reserve) GN=VACWR073 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.285e-29
Identity = 64/96 (66.67%), Postives = 72/96 (75.00%), Query Frame = 3 
Query:   36 FDFEKLAHDKAIVTENLNKIIDVNYYPVETARPSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKNIFETIYYHALKTSSEIAAKEGPYETY 323
            FDF KL     ++  NLNKIID+NYYP+  A  SN RHRPIGIGVQGLAD FILL   F+S EAQ LNK IFETIYY AL+ S E+A KEGPY+TY
Sbjct:  460 FDFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKEGPYDTY 555
[Close]
BLAST of EY675126 vs. ExPASy Swiss-Prot
Match: RIR1_VACCC (Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia virus (strain Copenhagen) GN=I4L PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.285e-29
Identity = 64/96 (66.67%), Postives = 72/96 (75.00%), Query Frame = 3 
Query:   36 FDFEKLAHDKAIVTENLNKIIDVNYYPVETARPSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKNIFETIYYHALKTSSEIAAKEGPYETY 323
            FDF KL     ++  NLNKIID+NYYP+  A  SN RHRPIGIGVQGLAD FILL   F+S EAQ LNK IFETIYY AL+ S E+A KEGPY+TY
Sbjct:  460 FDFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKEGPYDTY 555
[Close]
BLAST of EY675126 vs. ExPASy Swiss-Prot
Match: RIR1_VACCA (Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia virus (strain Ankara) GN=MVA065L PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.285e-29
Identity = 64/96 (66.67%), Postives = 72/96 (75.00%), Query Frame = 3 
Query:   36 FDFEKLAHDKAIVTENLNKIIDVNYYPVETARPSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKNIFETIYYHALKTSSEIAAKEGPYETY 323
            FDF KL     ++  NLNKIID+NYYP+  A  SN RHRPIGIGVQGLAD FILL   F+S EAQ LNK IFETIYY AL+ S E+A KEGPY+TY
Sbjct:  460 FDFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKEGPYDTY 555
The following BLAST results are available for this feature:
BLAST of EY675126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RIR1_ARATH1.911e-4179.61Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_MOUSE1.051e-3166.00Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_DANRE8.897e-3164.71Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_CAEEL1.162e-3065.00Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_PONAB2.589e-3065.00Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_HUMAN2.589e-3065.00Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_VARV1.285e-2966.67Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_VACCW1.285e-2966.67Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_VACCC1.285e-2966.67Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_VACCA1.285e-2966.67Ribonucleoside-diphosphate reductase large subunit... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-D12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675126 ID=EY675126; Name=EY675126; organism=Citrus sinensis; type=EST; length=932bp
AGGATTGTTGGGAGCCCACGTTCTAAAATAGATTTTTTGACTTTGAAAAA
TTAGCTCACGATAAAGCAATTGTTACTGAAAACCTTAACAAAATAATTGA
TGTTAATTACTACCCTGTTGAAACTGCCAGACCGTCAAATTTGCGACATA
GACCCATCGGTATTGGAGTTCAGGGTCTAGCAGATACCTTCATCTTACTT
GGAATGGCATTTGAATCACCAGAGGCTCAACAGCTGAACAAAAACATATT
TGAAACCATTTACTACCATGCTCTGAAAACTTCTTCGGAGATAGCTGCAA
AAGAAGGTCCTTATGAAACATATCATAATGACCCATGTGAGACAAGAGAA
TTCTCCCACCCGAACATGTGCAAATGAAATTCAATGAGAATCAAAAGGGA
ATGGCGCAAACAAATAGGGGGGGGGAGGGGACGAAAAGTGAACATGAAAA
AAATAAACGTAGAGAATGAAAAACAAATGGAAAAAAAGGCGGGCGAAAAA
AAACGAGAAGAAGAGAAAGACCACGCAAGAGGACCAGTCAGACCAAACAA
GCAAAAAAAGAAAAAAAAAAACAAAGAGAAAAAAGAAAAAAAGCAAAAAC
AAAAAAAAGAGAAGAGACAAAGAAAGAAAAAAACAAAAAAGACACAAACA
ACAGAACGAGAGAGAGACCGGAAAACAAACAGAACACAACAACAGCAAAA
ACAAAGAAGGAAGACCAAGACAGAGAGACAGAAACAAACAAAAAGCGATG
AGCGGGGAGAGCAAACAAAAAAAAGAGCAAAGCAGAAGGGAAGAAGGGGA
AAAAAAGAAAGAAAGAAAGAACAAACGAAAAAAGAACAGACAGCACGACG
AAAAAGAACAAAAAGGGAAAAACGAAAAAGAAAACGAAAAGAACAAACAG
GGACAGAAAAACCAAAAAAAAGAAAACGAACA
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