EY675125

Overview
NameEY675125
Unique NameEY675125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1049
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675125 vs. ExPASy Swiss-Prot
Match: RAE2_MOUSE (Rab proteins geranylgeranyltransferase component A 2 OS=Mus musculus GN=Chml PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 2.074e-18
Identity = 59/165 (35.76%), Postives = 87/165 (52.73%), Query Frame = 2
Query:    5 KLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENDVRISEEDLDSPFADFLTKMKLSHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGV 499
            K+  VP SRA +F  K L ++EK  LM+F         LD  + +D    ++     F+D+L   KL+  ++  +L++IAM       SE    T DG+     +   +GRF N     I+P+YG GE+PQ FCR  AV G +Y LR  V  L+ D++SG  KG+
Sbjct:  271 KVEQVPCSRADVFNSKELSMVEKRMLMKFLTFC-----LDYEQHSDEY--QDFKQCSFSDYLKTKKLTPNLQHFILHSIAMT------SESSCTTLDGLQATKNFLQCLGRFGNT--PFIFPLYGHGEIPQCFCRMCAVFGGVYCLRHKVQCLVVDKDSGRCKGI 420          
BLAST of EY675125 vs. ExPASy Swiss-Prot
Match: RAE1_MOUSE (Rab proteins geranylgeranyltransferase component A 1 OS=Mus musculus GN=Chm PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.673e-17
Identity = 56/161 (34.78%), Postives = 84/161 (52.17%), Query Frame = 2
Query:   17 VPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENDVRISEEDLDSPFADFLTKMKLSHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGV 499
            VP SRA +F  K L ++EK  LM+F      +    E   ++ +  EE   + F+++L   KL+  ++  VL++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +Y LR  V  L+ D+ S   K +
Sbjct:  286 VPCSRADVFNSKQLTMVEKRMLMKFLTFCVEY----EDHPDEYKAYEE---TTFSEYLKTQKLTPNLQYFVLHSIAMT------SETTSSTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAI 431          
BLAST of EY675125 vs. ExPASy Swiss-Prot
Match: RAE2_HUMAN (Rab proteins geranylgeranyltransferase component A 2 OS=Homo sapiens GN=CHML PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.138e-16
Identity = 56/165 (33.94%), Postives = 85/165 (51.52%), Query Frame = 2
Query:    5 KLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENDVRISEEDLDSPFADFLTKMKLSHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGV 499
            K+  VP SRA +F  K L ++EK  LM+F      +    E   ++ +   +     F+++L   KL+  ++  VL++IAM       SE    T DG+N    +   +GRF N     ++P+YGQGE+PQ FCR  AV G +Y LR  V   + D+ SG  K +
Sbjct:  272 KVEQVPCSRADVFNSKELTMVEKRMLMKFLTFCLEY----EQHPDEYQAFRQ---CSFSEYLKTKKLTPNLQHFVLHSIAMT------SESSCTTIDGLNATKNFLQCLGRFGNT--PFLFPLYGQGEIPQGFCRMCAVFGGIYCLRHKVQCFVVDKESGRCKAI 421          
BLAST of EY675125 vs. ExPASy Swiss-Prot
Match: RAE1_RAT (Rab proteins geranylgeranyltransferase component A 1 OS=Rattus norvegicus GN=Chm PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.536e-16
Identity = 57/161 (35.40%), Postives = 83/161 (51.55%), Query Frame = 2
Query:   17 VPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENDVRISEEDLDSPFADFLTKMKLSHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGV 499
            VP SRA +F  K L ++EK  LM+F      +    E   ++ R  E    + F+++L   KL+  ++  VL++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +Y LR  V  L+ D+ S   K V
Sbjct:  271 VPCSRADVFNSKQLTMVEKRMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQYFVLHSIAMT------SETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAV 416          
BLAST of EY675125 vs. ExPASy Swiss-Prot
Match: RAE1_HUMAN (Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 7.378e-16
Identity = 54/161 (33.54%), Postives = 81/161 (50.31%), Query Frame = 2
Query:   17 VPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENDVRISEEDLDSPFADFLTKMKLSHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGV 499
            VP SRA +F  K L ++EK  LM+F      +    +  +    I+       F ++L   KL+  ++ IV+++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +Y LR  V  L+ D+ S   K +
Sbjct:  274 VPCSRADVFNSKQLTMVEKRMLMKFLTFCMEYEKYPDEYKGYEEIT-------FYEYLKTQKLTPNLQYIVMHSIAMT------SETASSTIDGLKATKNFLHCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAI 419          
BLAST of EY675125 vs. ExPASy Swiss-Prot
Match: RABEP_DROME (Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 9.635e-16
Identity = 58/186 (31.18%), Postives = 89/186 (47.85%), Query Frame = 2
Query:    5 KLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENDVRISEEDLDSPFADFLTKMKLSHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRIG--FQVKDILEPQSWVPKS 556
            ++ SVP SR+ +F  K+L ++EK  LM+F          D  E+     S E     F ++L   +++ KI S V+ AIAM        E       G+ R   +  S+GR+ N     ++P+YG GELPQ FCR  AV G +Y L+  V  +  D NS  +     G   + K+++    + P S
Sbjct:  145 EIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACN-----DYGEDKCNEDSLEFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEE-------GMQRTQRFLGSLGRYGNT--PFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNSNEFLLSSAGKTLRAKNVVSAPGYTPVS 316          
BLAST of EY675125 vs. ExPASy Swiss-Prot
Match: GDI1_SCHPO (Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe GN=gdi1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.427e-13
Identity = 53/171 (30.99%), Postives = 84/171 (49.12%), Query Frame = 2
Query:    5 KLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENDVRISEEDLDSPFADFLTKMKLSHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRIGFQV 517
            ++  VP +     K   + L EK +  +F + V  +   D S   D+ I  + ++S F  F     L    +  + +A+A+   D  + +   +TR+   R+ LY SSI +F  +    IYP+YG GELPQ F R +A+ G  Y+L  PV  ++   + G   GVR G QV
Sbjct:  114 RIAKVPGNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINIDRDSMESVFKKF----GLQSGTQDFIGHAMALYLDDAYLKKPARETRE---RILLYASSIAKFGKS--PYIYPLYGLGELPQGFARLSAIYGGTYMLNQPVDEIVYG-DDGVAIGVRSGDQV 274          
BLAST of EY675125 vs. ExPASy Swiss-Prot
Match: GDI1_YEAST (Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae GN=GDI1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.789e-12
Identity = 42/166 (25.30%), Postives = 81/166 (48.80%), Query Frame = 2
Query:    5 KLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENDVRISEEDLDSPFADFLTKMKLSHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR 502
            K+  VP +         +G+ EK ++ +F + +  +   D S    + + +  +D  +  F     L +  K  + +A+A+   D  + +     R    R+ LY  S+ R+  +    +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+
Sbjct:  123 KIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKF----GLGNSTKEFIGHAMALWTNDDYLQQ---PARPSFERILLYCQSVARYGKS--PYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK 279          
BLAST of EY675125 vs. ExPASy Swiss-Prot
Match: GDIA_BOVIN (Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.441e-12
Identity = 52/187 (27.81%), Postives = 89/187 (47.59%), Query Frame = 2
Query:    5 KLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENDVRISE--EDLDSPFADFLTKMKLSHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRIGFQV---KDILEPQSWVP 550
            K+  VP +         +G+ EK +  +F   V         +END +  E  +  ++   D   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S+ R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+   +V   K ++   S+VP
Sbjct:  115 KIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSESLARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVKSEGEVARCKQLICDPSYVP 288          
BLAST of EY675125 vs. ExPASy Swiss-Prot
Match: GDIA_MOUSE (Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 1.102e-11
Identity = 51/187 (27.27%), Postives = 89/187 (47.59%), Query Frame = 2
Query:    5 KLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENDVRISE--EDLDSPFADFLTKMKLSHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRIGFQV---KDILEPQSWVP 550
            K+  VP +         +G+ EK +  +F   V         +END +  E  +  ++   D   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S+ R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+   +V   K ++   S++P
Sbjct:  115 KIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSESLARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVKSEGEVARCKQLICDPSYIP 288          
The following BLAST results are available for this feature:
BLAST of EY675125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RAE2_MOUSE2.074e-1835.76Rab proteins geranylgeranyltransferase component A... [more]
RAE1_MOUSE6.673e-1734.78Rab proteins geranylgeranyltransferase component A... [more]
RAE2_HUMAN1.138e-1633.94Rab proteins geranylgeranyltransferase component A... [more]
RAE1_RAT2.536e-1635.40Rab proteins geranylgeranyltransferase component A... [more]
RAE1_HUMAN7.378e-1633.54Rab proteins geranylgeranyltransferase component A... [more]
RABEP_DROME9.635e-1631.18Rab proteins geranylgeranyltransferase component A... [more]
GDI1_SCHPO3.427e-1330.99Probable secretory pathway GDP dissociation inhibi... [more]
GDI1_YEAST3.789e-1225.30Rab GDP-dissociation inhibitor OS=Saccharomyces ce... [more]
GDIA_BOVIN8.441e-1227.81Rab GDP dissociation inhibitor alpha OS=Bos taurus... [more]
GDIA_MOUSE1.102e-1127.27Rab GDP dissociation inhibitor alpha OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-D11-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675125 ID=EY675125; Name=EY675125; organism=Citrus sinensis; type=EST; length=1049bp
TGCCAAACTGTGTAGTGTGCCGGATTCACGTGCTGCGATTTTTAAGGATA
AGAGTTTGGGTTTGATGGAGAAGAATCAGTTGATGAGATTCTTTAAGCTT
GTTCAGGGACACTTGAGCCTAGATGAGAGCGAAGAAAATGATGTGAGAAT
CTCCGAGGAAGATTTGGACAGTCCTTTTGCTGATTTTTTGACTAAAATGA
AGTTGTCTCACAAGATTAAATCTATTGTTCTATATGCAATAGCGATGGCA
GATTATGATCAAGAAGTCAGTGAATATGTGCTTAAGACAAGAGATGGCAT
CAATCGATTAGCTCTCTACAACTCATCCATTGGCAGGTTTCAAAATGCAC
TTGGGGCTTTGATATATCCCATTTATGGGCAAGGGGAACTACCACAAGCC
TTTTGCCGTCGTGCTGCCGTCAAAGGCTGTCTTTATGTTCTGCGGATGCC
GGTGATTTCTCTGCTTACGGATCAGAATAGTGGGTCCTATAAAGGTGTTA
GAATTGGCTTTCAGGTCAAGGATATATTGGAGCCACAAAGTTGGGTCCCT
AAATCATTCTTTTTACTGTTCCGGGGTCTTTAACCTCATCTCATCCACCA
CTGCGAGAAAAGTTTTTCAAGCTTTTAGTCCCCAATGGATAAATAAAGGG
AAGGGGGGCGTGGGGGGGATTGCTATTACAAGGAGTTTCCTTGGAAACCC
AAATTCATATCAAAATTTTTTTGGGGAAGTTTTGCCCCCCCCAAATTTTA
GGTTTCCCCAGGGGGGGGGTGAAGTCAATCCCAGAATTACCCACGTTTGG
GGGGGAATATTTATAATGGTATGAGCATGGTCAAAAAAGTGTTGGGGGGT
GGAATTTTTTCCACCGCTTTGTATTAAACAACCGATACCATCCAGGGGGG
GAAAAAAGAATTTATCTCGAAAATGGGGCGGCGTTGAATAAGGGCGGTGC
AGGAAGAAGAAAGAAGTGGTGTGGGAAAGTGGACGGGAGGAGAGGGTATG
GGGGTGGGATGAGAGAAATGGTGCGCCGACCACAGACACGCTGGCAAGC
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