EY675105

Overview
NameEY675105
Unique NameEY675105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length978
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_PSEPF (Protein translocase subunit secA OS=Pseudomonas fluorescens (strain Pf0-1) GN=secA PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 7.617e-36
Identity = 78/104 (75.00%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    1 TLFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXMQFQHDEAPGLEA-PEVLGEEVDVALAQAPVRNEQKLGRNELCWCGSGKKFKHCHGXNQ 309
            TLFSELLDSIKRDSIRVLSHVQVRREDP                 MQF+H EAPGLEA PE++GEEVDVALA APVRNEQKLGRNELC+CGSGKKFKHCHG  Q
Sbjct:  809 TLFSELLDSIKRDSIRVLSHVQVRREDPAEEEQRLRQEAEALAARMQFEHAEAPGLEAQPELVGEEVDVALAAAPVRNEQKLGRNELCYCGSGKKFKHCHGQIQ 912          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_PSEF5 (Protein translocase subunit secA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=secA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 9.311e-34
Identity = 74/102 (72.55%), Postives = 78/102 (76.47%), Query Frame = 1
Query:    1 TLFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXMQFQHDEAPGLEAPEVL--GEEVDVALAQAPVRNEQKLGRNELCWCGSGKKFKHCHG 300
            TLFSELLDSIKRDSIRVLSHVQVRREDP                 MQF+H EAPGL+ PE L  G EVDVALA APVRNEQKLGRNELC+CGSGKK+KHCHG
Sbjct:  809 TLFSELLDSIKRDSIRVLSHVQVRREDPAEEEARLRQEAEALAQRMQFEHAEAPGLDQPEALEEGVEVDVALATAPVRNEQKLGRNELCYCGSGKKYKHCHG 910          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_PSEPW (Protein translocase subunit secA OS=Pseudomonas putida (strain W619) GN=secA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.635e-31
Identity = 65/100 (65.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:    1 TLFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXMQFQHDEAPGLEAPEVLGEEVDVALAQAPVRNEQKLGRNELCWCGSGKKFKHCHG 300
            TLF ELL+SIKRD+IRVLSHVQVRREDP+                MQFQH  APGLE+ ++  E  +VA+A APVRN+QKLGRNE CWCGSGKKFKHCHG
Sbjct:  809 TLFQELLESIKRDTIRVLSHVQVRREDPVEEEARLRREAEELASRMQFQHAPAPGLESEQLSEEGAEVAVAVAPVRNDQKLGRNEPCWCGSGKKFKHCHG 908          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_PSEPG (Protein translocase subunit secA OS=Pseudomonas putida (strain GB-1) GN=secA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.643e-30
Identity = 65/100 (65.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:    1 TLFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXMQFQHDEAPGLEAPEVLGEEVDVALAQAPVRNEQKLGRNELCWCGSGKKFKHCHG 300
            +LF ELL+SIKRD+IRVLSHVQVRREDPI                MQFQH  APGLE+ ++  E  +VA+A APVRN+QKLGRNE CWCGSGKKFKHCHG
Sbjct:  809 SLFQELLESIKRDTIRVLSHVQVRREDPIEEEARLRREAEELASRMQFQHAAAPGLESEQLSEEGAEVAVAAAPVRNDQKLGRNEPCWCGSGKKFKHCHG 908          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_PSEP1 (Protein translocase subunit secA OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=secA PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 4.782e-30
Identity = 64/100 (64.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    1 TLFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXMQFQHDEAPGLEAPEVLGEEVDVALAQAPVRNEQKLGRNELCWCGSGKKFKHCHG 300
            +LF ELL+SIKRD+IRVLSHVQVRREDP                 MQFQH  APGLE+ ++  E  +VA+A APVRN+QKLGRNE CWCGSGKKFKHCHG
Sbjct:  809 SLFQELLESIKRDTIRVLSHVQVRREDPAEEEARLRREAEELASRMQFQHAAAPGLESEQLSEEGAEVAVASAPVRNDQKLGRNEPCWCGSGKKFKHCHG 908          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_PSESM (Protein translocase subunit secA OS=Pseudomonas syringae pv. tomato GN=secA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.817e-29
Identity = 65/102 (63.73%), Postives = 72/102 (70.59%), Query Frame = 1
Query:    1 TLFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXMQFQHDEAPGLEAP--EVLGEEVDVALAQAPVRNEQKLGRNELCWCGSGKKFKHCHG 300
            TLF ELLDSIKRD+IRVLSHVQVRREDP                 MQF+H  APGL+ P  +  G EV VA+   P+RN+QKLGRNELCWCGSGKKFKHCHG
Sbjct:  809 TLFQELLDSIKRDTIRVLSHVQVRREDPEEEEARLRREAEELASRMQFEHAPAPGLDQPLADEEGGEVPVAVVSEPIRNDQKLGRNELCWCGSGKKFKHCHG 910          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_PSE14 (Protein translocase subunit secA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=secA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.373e-29
Identity = 65/102 (63.73%), Postives = 72/102 (70.59%), Query Frame = 1
Query:    1 TLFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXMQFQHDEAPGLEAP--EVLGEEVDVALAQAPVRNEQKLGRNELCWCGSGKKFKHCHG 300
            TLF ELLDSIKRD+IRVLSHVQVRREDP                 MQF+H  APG++ P  +  G E  VA+A  PVRN+QKLGRNELCWCGSGKKFKHCHG
Sbjct:  809 TLFQELLDSIKRDTIRVLSHVQVRREDPEEEEARLRQEAEELASRMQFEHAPAPGIDQPLLDEEGGEAPVAVASEPVRNDQKLGRNELCWCGSGKKFKHCHG 910          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_PSEPK (Protein translocase subunit secA OS=Pseudomonas putida (strain KT2440) GN=secA PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 3.099e-29
Identity = 63/100 (63.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:    1 TLFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXMQFQHDEAPGLEAPEVLGEEVDVALAQAPVRNEQKLGRNELCWCGSGKKFKHCHG 300
            +LF ELL+SIKRD+IRVLSHVQVRREDP                 MQFQH  APGL + ++  E  +VA+A APVRN+QKLGRNE CWCGSGKKFKHCHG
Sbjct:  809 SLFQELLESIKRDTIRVLSHVQVRREDPAEEEARLRREAEELASRMQFQHAAAPGLGSEQLSEEGAEVAVASAPVRNDQKLGRNEPCWCGSGKKFKHCHG 908          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_PSEU2 (Protein translocase subunit secA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=secA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.048e-29
Identity = 67/103 (65.05%), Postives = 73/103 (70.87%), Query Frame = 1
Query:    1 TLFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXMQFQHDEAPGLEAPEVLGEE---VDVALAQAPVRNEQKLGRNELCWCGSGKKFKHCHG 300
            TLF ELLDSIKRD+IRVLSHVQVRREDP                 MQF+H  APG+E P +L EE     VA+A  PVRN+QKLGRNELCWCGSGKKFKHCHG
Sbjct:  809 TLFQELLDSIKRDTIRVLSHVQVRREDPEEEEARLRQDAEELASRMQFEHAPAPGIEQP-LLDEEGGGAPVAVASEPVRNDQKLGRNELCWCGSGKKFKHCHG 910          
BLAST of EY675105 vs. ExPASy Swiss-Prot
Match: SECA_PSEE4 (Protein translocase subunit secA OS=Pseudomonas entomophila (strain L48) GN=secA PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 5.287e-29
Identity = 65/101 (64.36%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 TLFSELLDSIKRDSIRVLSHVQVRREDPIXXXXXXXXXXXXXXXXMQFQHDEAPGLEAPEVLGEE-VDVALAQAPVRNEQKLGRNELCWCGSGKKFKHCHG 300
            TLF ELL+SIKRD+IRVLSHVQVRREDP                 MQFQH  APG+E+     EE  +VA+A APVRN+QKLGRNE CWCGSGKKFKHCHG
Sbjct:  809 TLFQELLESIKRDTIRVLSHVQVRREDPAEEEARLRREAEELASRMQFQHAAAPGMESDLQASEEGAEVAVAAAPVRNDQKLGRNEPCWCGSGKKFKHCHG 909          
The following BLAST results are available for this feature:
BLAST of EY675105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
SECA_PSEPF7.617e-3675.00Protein translocase subunit secA OS=Pseudomonas fl... [more]
SECA_PSEF59.311e-3472.55Protein translocase subunit secA OS=Pseudomonas fl... [more]
SECA_PSEPW9.635e-3165.00Protein translocase subunit secA OS=Pseudomonas pu... [more]
SECA_PSEPG1.643e-3065.00Protein translocase subunit secA OS=Pseudomonas pu... [more]
SECA_PSEP14.782e-3064.00Protein translocase subunit secA OS=Pseudomonas pu... [more]
SECA_PSESM1.817e-2963.73Protein translocase subunit secA OS=Pseudomonas sy... [more]
SECA_PSE142.373e-2963.73Protein translocase subunit secA OS=Pseudomonas sy... [more]
SECA_PSEPK3.099e-2963.00Protein translocase subunit secA OS=Pseudomonas pu... [more]
SECA_PSEU24.048e-2965.05Protein translocase subunit secA OS=Pseudomonas sy... [more]
SECA_PSEE45.287e-2964.36Protein translocase subunit secA OS=Pseudomonas en... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-B04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675105 ID=EY675105; Name=EY675105; organism=Citrus sinensis; type=EST; length=978bp
ACGCTGTTCTCCGAGCTGCTGGATTCGATCAAGCGCGATTCGATTCGTGT
GCTGTCCCACGTTCAGGTGCGTCGCGAAGACCCGATCGAGGAAGAAGCCC
GCCTGCGTCAGGAAGCCGAGGCACTGGCTGCGCGCATGCAGTTCCAGCAC
GACGAAGCACCTGGCCTTGAGGCTCCGGAAGTGTTGGGTGAAGAGGTCGA
TGTGGCCCTGGCTCAAGCTCCGGTGCGCAATGAGCAGAAGCTGGGTCGCA
ATGAACTGTGCTGGTGCGGTTCGGGCAAGAAGTTCAAACACTGCCACGGC
NGAAATCAACTAAGATTTTCGTCTGACGCTGCAACACCCCGCGCCGCGAC
CGGCATCAGCCGTCGCGGCGTTTTGCCATTTTGTCACCGTCGAGAGTGAC
GGGTCACACATCCACTATTTTTAGGAGCGCATTCATGGCTGTTGGTCTTG
GGCCTTTGCCCACGTTGCCCCCGGTTGGCGGTTTTGAATTCGGTATGGCT
TCGGCCGGGTTCAAACGCCCGGGGGCCAAGGGAGGTGGTGGTGATGGCCT
TTGCCAAAAGGTCCACCCGCCCCGGGTGTGTTCACCCTGAAAGGGTTTTG
GCCCGGCTCCCGGTGATTTTGGGCCAACAAGCGGGTTGAAAGGGCCCGGG
GGGGTTCACTGGGTAAGCCATCACTGGGCAAGGCACCCACCCCGGGCCCC
CGGAAAACCAGGGGTTTGGAGCACTGTTCGCCCCCAACTTTGCGCCGGAA
GGGAGGAAAAAACTGAGAAGGGGTTATTAATATACACAACGAGTGACCCA
CCACCATAGCCCCCCACAGAAGATATGAATGATGGAGCCAATTACGCTCG
CACTAACAAACAATCGCAGATGAGAGACGTGTCTTTGTCGATGGCCCCAA
CAAATATGACGGATTTACAAGAAGGTCTCGAGTGGGTGTGTGACACAGCG
NCGAGGTGACCGCTAGTGCTGCACACAC
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