EY675104

Overview
NameEY675104
Unique NameEY675104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1029
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675104_ssr112 microsatellite EY675104_ssr112:112..121. BLAST: Citrus ESTs to Prunus persica proteins V1
EY675104_ssr169 microsatellite EY675104_ssr169:169..183. BLAST: Citrus ESTs to Prunus persica proteins V1
EY675104_ssr215 microsatellite EY675104_ssr215:215..226. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY675104 vs. ExPASy Swiss-Prot
Match: YAB2_ARATH (Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.813e-28
Identity = 74/170 (43.53%), Postives = 96/170 (56.47%), Query Frame = 1
Query:  286 MSLDLSSERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSAL---QAVPLQDPQKQHINLENSIT--KDCGSSSKCNKFSSPFETAKHETPRMLPILPPKKRQKFLSPTKRLTRRKSKGLRAVXXXXXXXXXXXXXXXXWANFPHI---FPLD*NWEG 771
            MS+D SSERVCYVHC++C TILAVSVP +SLF +VTVRCGHC NLL++N+  +L    A P+    + H     S+   KDC SSS+     S  E    E PRM PI PP+KRQ+  S   R  + + + ++A                 WA+FPHI     LD N +G
Sbjct:    1 MSVDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPIHQDLQPHRQHTTSLVTRKDCASSSRSTNNLS--ENIDREAPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKG 168          
BLAST of EY675104 vs. ExPASy Swiss-Prot
Match: YAB2_ORYSJ (Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.965e-25
Identity = 59/150 (39.33%), Postives = 89/150 (59.33%), Query Frame = 1
Query:  307 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQKQHINLENSITK----DCGSSSKCNKFSSPFETAKHETPRMLPILPPKKRQKFLSPTKRLTRRKSKGLRAVXXXXXXXXXXXXXXXXWANFPHI 744
            E VCYVHCN+CNTI AVSVP +S+ NIVTVRCGHC +LL+VN+   +QA+P +D  + ++ + N   +    + GSSS+  +   P   +K++T  ML + PP+KRQ+  S   R  + + + ++A                 WA+FP+I
Sbjct:   10 EHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNLKMHNMSFRENYSEYGSSSRYGRV--PMMFSKNDTEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNI 157          
BLAST of EY675104 vs. ExPASy Swiss-Prot
Match: YAB5_ARATH (Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.495e-21
Identity = 54/149 (36.24%), Postives = 85/149 (57.05%), Query Frame = 1
Query:  298 LSSERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQKQHINLENSITKDCGSSSKCNKFSSPFETAKHETPRMLPILPPKKRQKFLSPTKRLTRRKSKGLRAVXXXXXXXXXXXXXXXXWANFPHI 744
            +++E++CY+ CN+CN ILAV+VPCSSLF+IVTVRCGHC NL +VNM +ALQ++      + +    N    + GSSS+ +       + +  T + +   PP+KRQ+  S   +  + + + ++A                 WA+FPHI
Sbjct:    6 MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSL-----SRPNFQATNYAVPEYGSSSRSHTKIPSRISTRTITEQRIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHI 149          
BLAST of EY675104 vs. ExPASy Swiss-Prot
Match: YAB6_ORYSJ (Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.399e-19
Identity = 62/178 (34.83%), Postives = 89/178 (50.00%), Query Frame = 1
Query:  304 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP-LQDPQKQHINLENSITKDC------------GSSSKCNKFSSP--------FETAKHETPRMLPILPPKKRQKFLSPTKRLTRRKSKGLRAVXXXXXXXXXXXXXXXXWANFPHI-FPLD*NWEG 771
            +E+VCYVHCN+CNTILAVSVP +S+ NIVTVRCGHC NLL+VN+   + + P LQD    H +L+ S    C             ++S  +K   P        +     +  + L   PP+KRQ+  S   R  + + + ++A                 WA++P+I F L    EG
Sbjct:    8 AEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQD--HHHHHLQESGLSGCFRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLSPGHEG 183          
BLAST of EY675104 vs. ExPASy Swiss-Prot
Match: YAB1_ORYSJ (Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.944e-19
Identity = 50/153 (32.68%), Postives = 80/153 (52.29%), Query Frame = 1
Query:  286 MSLDLSSERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQKQHINLENSITKDCGSSSKCNKFSSPFETAKHETPRMLPILPPKKRQKFLSPTKRLTRRKSKGLRAVXXXXXXXXXXXXXXXXWANFPHI 744
            MS+  +SE VCYV+CNYCNTIL V+VP +  +NIVTVRCGHC  +L++++    QA  +QD Q Q+   + +       +S+  + S+          ++ PI PP+KRQ+  S   R  + + + ++                  WA+ P +
Sbjct:    1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDHQVQNRGFQGNNFGSYDIASRNQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRL 153          
BLAST of EY675104 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSJ (Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.677e-18
Identity = 65/187 (34.76%), Postives = 83/187 (44.39%), Query Frame = 1
Query:  304 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP-------------LQDPQKQHINLE-------------------NSITKDCGSSSKCNKFSSPFETAK-----HETPRMLPI---LPPKKRQKFLSPTKRLTRRKSKGLRAVXXXXXXXXXXXXXXXXWANFPHI 744
            +E++CYVHCN C+TILAV VPCSSLF  VTVRCGHCANLL+VN+   L   P             L  P   H  L+                   +SIT    SS   N  +     AK      E P+  P     PP+KRQ+  S   R  + + + ++A                 WA+FPHI
Sbjct:   22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHI 208          
BLAST of EY675104 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSI (Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.677e-18
Identity = 65/187 (34.76%), Postives = 83/187 (44.39%), Query Frame = 1
Query:  304 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP-------------LQDPQKQHINLE-------------------NSITKDCGSSSKCNKFSSPFETAK-----HETPRMLPI---LPPKKRQKFLSPTKRLTRRKSKGLRAVXXXXXXXXXXXXXXXXWANFPHI 744
            +E++CYVHCN C+TILAV VPCSSLF  VTVRCGHCANLL+VN+   L   P             L  P   H  L+                   +SIT    SS   N  +     AK      E P+  P     PP+KRQ+  S   R  + + + ++A                 WA+FPHI
Sbjct:   22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHI 208          
BLAST of EY675104 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSJ (Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.470e-16
Identity = 60/186 (32.26%), Postives = 82/186 (44.09%), Query Frame = 1
Query:  307 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM--------VSALQAVP----LQDPQKQHINLE--------------------NSIT---KDCGSSSKCNKFSSPFETAKHETPRMLPILP-----PKKRQKFLSPTKRLTRRKSKGLRAVXXXXXXXXXXXXXXXXWANFPHI 744
            E++CYVHCN+C+TILAV VPCSSLF  VTVRCGHCANLL+VN+         S    +P    L  P   H  L+                    +SIT     C +++     +S    A    P+     P      +KRQ+  S   R  + + + ++A                 WA+FPHI
Sbjct:   29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHI 214          
BLAST of EY675104 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSI (Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.470e-16
Identity = 60/186 (32.26%), Postives = 82/186 (44.09%), Query Frame = 1
Query:  307 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM--------VSALQAVP----LQDPQKQHINLE--------------------NSIT---KDCGSSSKCNKFSSPFETAKHETPRMLPILP-----PKKRQKFLSPTKRLTRRKSKGLRAVXXXXXXXXXXXXXXXXWANFPHI 744
            E++CYVHCN+C+TILAV VPCSSLF  VTVRCGHCANLL+VN+         S    +P    L  P   H  L+                    +SIT     C +++     +S    A    P+     P      +KRQ+  S   R  + + + ++A                 WA+FPHI
Sbjct:   29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHI 214          
BLAST of EY675104 vs. ExPASy Swiss-Prot
Match: YAB1_ARATH (Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.502e-16
Identity = 55/164 (33.54%), Postives = 79/164 (48.17%), Query Frame = 1
Query:  304 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVS----ALQAVPLQDPQKQHINLENSITKDCGSSSKCNKFSSPFETA------------KHETPRMLPI-LPPKKRQKFLSPTKRLTRRKSKGLRAVXXXXXXXXXXXXXXXXWANFPHI 744
            S+ +CYV CN+C TILAV+VP +SLF  VTVRCG C NLL+VNM S    A   + LQ     + N ++ + +   + S  N                     +HE P+  P+  PP+KRQ+  S   R  + + + ++A                 WA+FPHI
Sbjct:   22 SDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQLQLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHI 185          
The following BLAST results are available for this feature:
BLAST of EY675104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
YAB2_ARATH2.813e-2843.53Putative axial regulator YABBY 2 OS=Arabidopsis th... [more]
YAB2_ORYSJ4.965e-2539.33Protein YABBY 2 OS=Oryza sativa subsp. japonica GN... [more]
YAB5_ARATH1.495e-2136.24Axial regulator YABBY 5 OS=Arabidopsis thaliana GN... [more]
YAB6_ORYSJ1.399e-1934.83Protein YABBY 6 OS=Oryza sativa subsp. japonica GN... [more]
YAB1_ORYSJ6.944e-1932.68Protein YABBY 1 OS=Oryza sativa subsp. japonica GN... [more]
YAB4_ORYSJ7.677e-1834.76Protein YABBY 4 OS=Oryza sativa subsp. japonica GN... [more]
YAB4_ORYSI7.677e-1834.76Protein YABBY 4 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB5_ORYSJ2.470e-1632.26Protein YABBY 5 OS=Oryza sativa subsp. japonica GN... [more]
YAB5_ORYSI2.470e-1632.26Protein YABBY 5 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB1_ARATH5.502e-1633.54Axial regulator YABBY 1 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-006-B02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675104 ID=EY675104; Name=EY675104; organism=Citrus sinensis; type=EST; length=1029bp
CACGCGTCCGATAGAAACCCACTACCCCACATATACTCTCCCCTACACTT
CACTCCCGATCAGACTTGTCCTTTCAGATTTTTTCCTTCTCTTTTTATCA
CCATTTTCTCCCTCTCTCTCTCCAAATAATTATTATTTATACATGAAATC
AAACCATTTTGTTTTGTTTTCTTCTTCTTCTTCGTCTTTGTCTTTCTTTT
AATTTGTTCAAGATTTGATTGATTGATAATAGAACTCTTGCGTTTCTATT
GTTTGTCGGTACACTTCTTGATCTCCACTGAAACTATGTCACTGGACTTG
TCATCTGAACGTGTTTGTTATGTTCACTGCAACTACTGCAACACCATTTT
AGCGGTGAGTGTTCCTTGCTCAAGTTTGTTCAACATTGTGACTGTTAGAT
GTGGGCATTGCGCCAATTTGCTAAATGTAAACATGGTATCTGCACTTCAA
GCAGTTCCTCTTCAAGACCCTCAGAAACAACACATAAACCTAGAAAATTC
CATTACTAAGGATTGTGGATCATCTTCAAAATGCAATAAGTTTTCTTCAC
CATTTGAGACTGCAAAACATGAAACTCCTCGAATGCTTCCTATTCTTCCC
CCAAAAAAAAGACAAAAATTCCTTTCTCCTACAAAAAGGTTAACAAGGAG
GAAATCCAAAGGATTAAGGGCAGTAACCCCGACACCACCCAAAAAAAAAC
TTTTAACACAACCAACAAAAAAATGGGCAAATTTTCCCCACATTTTCCCT
TTGGATTAAAACTGGGAGGGAAAAAACAAAAAAAAAAAAAAAAAAAGGTG
TCCCCCCCTAACCAAAAAGGGACCCCAAAAAATCCAAAGGGGAATTTCCA
AAAAAAAAAACCCTTTAATAAAAAAAAATATATTAAAGTGGGGAGAAAAA
ATCGCCCGGCCACCCCCCCGAACAAAAAAAAATCTTAAAATAAAAAATTT
TTGTTAAAAAAAACCGGGCGGAAAAAAACACACCAACACAAGTCTTTATA
ATAAATAAAAAAAAAAAAAATATATATTA
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