EY675064

Overview
NameEY675064
Unique NameEY675064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1065
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8520 contig Csv1_Contig8520:1..1065. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY675064 vs. ExPASy Swiss-Prot
Match: IDH_AZOVI (Isocitrate dehydrogenase [NADP] OS=Azotobacter vinelandii GN=icd PE=1 SV=5)

HSP 1 Score: 304.679 bits (779), Expect = 6.078e-82
Identity = 157/212 (74.06%), Postives = 170/212 (80.19%), Query Frame = 1
Query:   22 SRVDAMKFTLERTRKGLDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLVEENFLRWDSLGEFLALAASLEHLGVNYNNPKALVLSKTLDQATGQFLDNNKSPSRKVGNIDNRGSHFXXXXXXXXXXXXXTEDTALQAQFGELAQTLTANEATIVAELNAVQGKPVDIGGYYAPNAKLNSKAMRPSA 657
            S V+A +F+L R R+G DTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLM+GGGLFETGAGGSAPKHVQQ +EE +LRWDSLGEFLALAASLEHLG  Y NPKALVL+ TLDQATG+ LDNNKSP+RKVG IDNRGSHF             TED  LQAQF  +A+ LT NE  IV EL A QGKPVDI GYY PN  L SKA+RPSA
Sbjct:  520 SPVEATRFSLARIREGKDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMSGGGLFETGAGGSAPKHVQQFLEEGYLRWDSLGEFLALAASLEHLGNAYKNPKALVLASTLDQATGKILDNNKSPARKVGEIDNRGSHFYLALYWAQALAAQTEDKELQAQFTGIAKALTDNETKIVGELAAAQGKPVDIAGYYHPNTDLTSKAIRPSA 731          
BLAST of EY675064 vs. ExPASy Swiss-Prot
Match: IDH2_COLMA (Isocitrate dehydrogenase [NADP] 2 OS=Colwellia maris GN=icd2 PE=1 SV=3)

HSP 1 Score: 278.87 bits (712), Expect = 3.572e-74
Identity = 144/209 (68.90%), Postives = 157/209 (75.12%), Query Frame = 1
Query:   28 VDAMKFTLERTRKGLDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLVEENFLRWDSLGEFLALAASLEHLGVNYNNPKALVLSKTLDQATGQFLDNNKSPSRKVGNIDNRGSHFXXXXXXXXXXXXXTEDTALQAQFGELAQTLTANEATIVAELNAVQGKPVDIGGYYAPNAKLNSKAMRPS 654
            V A +FTL R  KG D ISVTGNVLRDYLTDLFPI+ELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQ  +EN LRWDSLGEFLALAASLEH+ V   N +A +L+ TLD ATG+FLD NKSPSRKVG +DNRGSHF             T DT LQA F  +AQ LT  E  IVAELNA QG  +D+ GYY  + KL  KAMRPS
Sbjct:  524 VKACEFTLARVAKGEDAISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFEKENHLRWDSLGEFLALAASLEHVAVTTGNARAQILADTLDAATGKFLDTNKSPSRKVGELDNRGSHFYLAMYWAQALAAQTTDTELQASFSSVAQALTKQEEKIVAELNAAQGPAIDLNGYYFADTKLAEKAMRPS 732          
BLAST of EY675064 vs. ExPASy Swiss-Prot
Match: IDH_COREF (Isocitrate dehydrogenase [NADP] OS=Corynebacterium efficiens GN=icd PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 3.351e-64
Identity = 131/212 (61.79%), Postives = 149/212 (70.28%), Query Frame = 1
Query:   22 SRVDAMKFTLERTRKGLDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLVEENFLRWDSLGEFLALAASLEHLGVNYNNPKALVLSKTLDQATGQFLDNNKSPSRKVGNIDNRGSHFXXXXXXXXXXXXXTEDTALQAQFGELAQTLTANEATIVAELNAVQGKPVDIGGYYAPNAKLNSKAMRPSA 657
            S V+A +  ++R R+G DTISVTGNVLRDY TDLFPI+ELGTSAKMLS+VPLM GGGLFETGAGGSAPKHVQQ++EEN LRWDSLGEFLALA S  H     NN KA VL+  LD+AT + L+  KSPSRKVG IDNRGSHF             TED  L   F  +A+ L    A I A L   QGKPVD+GGYYAP+ +  S  MRP A
Sbjct:  507 SPVEATQHAIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLMAGGGLFETGAGGSAPKHVQQVIEENHLRWDSLGEFLALAESFRHELNTRNNTKAGVLADALDRATEKLLNEEKSPSRKVGEIDNRGSHFWLATYWADELANQTEDAELAETFAPVAEALNNQAADIDAALIGEQGKPVDLGGYYAPSDEKTSAIMRPVA 718          
BLAST of EY675064 vs. ExPASy Swiss-Prot
Match: IDH_CORGL (Isocitrate dehydrogenase [NADP] OS=Corynebacterium glutamicum GN=icd PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.837e-63
Identity = 130/212 (61.32%), Postives = 149/212 (70.28%), Query Frame = 1
Query:   22 SRVDAMKFTLERTRKGLDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLVEENFLRWDSLGEFLALAASLEHLGVNYNNPKALVLSKTLDQATGQFLDNNKSPSRKVGNIDNRGSHFXXXXXXXXXXXXXTEDTALQAQFGELAQTLTANEATIVAELNAVQGKPVDIGGYYAPNAKLNSKAMRPSA 657
            S V+A + +++R R+G DTISVTGNVLRDY TDLFPI+ELGTSAKMLS+VPLM GGGLFETGAGGSAPKHVQQ+ EEN LRWDSLGEFLALA S  H   N  N KA VL+  LD+AT + L+  KSPSRKVG IDNRGSHF             TED  L A F  +A+ L    A I A L AVQG   D+GGYY+PN +  +  MRP A
Sbjct:  516 SPVEATQLSIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLMAGGGLFETGAGGSAPKHVQQVQEENHLRWDSLGEFLALAESFRHELNNNGNTKAGVLADALDKATEKLLNEEKSPSRKVGEIDNRGSHFWLTKFWADELAAQTEDADLAATFAPVAEALNTGAADIDAALLAVQGGATDLGGYYSPNEEKLTNIMRPVA 727          
The following BLAST results are available for this feature:
BLAST of EY675064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IDH_AZOVI6.078e-8274.06Isocitrate dehydrogenase [NADP] OS=Azotobacter vin... [more]
IDH2_COLMA3.572e-7468.90Isocitrate dehydrogenase [NADP] 2 OS=Colwellia mar... [more]
IDH_COREF3.351e-6461.79Isocitrate dehydrogenase [NADP] OS=Corynebacterium... [more]
IDH_CORGL2.837e-6361.32Isocitrate dehydrogenase [NADP] OS=Corynebacterium... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-E04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675064 ID=EY675064; Name=EY675064; organism=Citrus sinensis; type=EST; length=1065bp
GCACTGCGGTACGGTCCGGATTCCCGGGTCGACGCGATGAAGTTCACCCT
GGAGCGCACCCGCAAGGGCCTGGACACCATCTCGGTGACCGGCAACGTAT
TGCGCGACTACCTGACTGACCTGTTCCCGATCATGGAACTGGGCACCAGC
GCCAAGATGCTGTCGATCGTGCCACTGATGAACGGTGGCGGCCTGTTCGA
AACCGGTGCCGGCGGTTCGGCTCCGAAGCACGTACAGCAACTGGTTGAAG
AAAACTTCCTGCGCTGGGATTCCCTGGGCGAGTTCCTGGCCCTGGCCGCG
TCCCTCGAGCATTTGGGTGTGAACTACAACAACCCGAAAGCCCTGGTGCT
GTCCAAGACCCTGGACCAGGCCACCGGCCAGTTCCTCGACAACAACAAGT
CACCATCGCGCAAAGTCGGCAACATCGACAACCGCGGCAGCCACTTCTAC
CTGGCTCTGTACTGGGCTCAAGCCCTGGCCGCCCAGACGGAAGACACTGC
ACTGCAAGCGCAGTTTGGCGAACTGGCCCAAACCCTGACCGCGAACGAAG
CAACCATCGTTGCCGAGCTCAACGCCGTTCAGGGCAAGCCAGTGGACATC
GGTGGCTACTACGCACCGAACGCCAAGCTGAACAGCAAGGCCATGCGCCC
AAGCGCCCCCCCTTCACGCGGCAACCCCTGCCCTGGGTGTTAGGGTGGTA
AGAAGCCAAAAAAACCCCCGGGCCCCGTGCCCGGGGTTTTCGGTTTTCGG
AACTGGAACTTTTTTTATTGAAAAAACCCCAAACCCAAATGTGGGGGGGG
ATAGATNTCAAGAACACGAACAATGCTTGCGAAGACGCAACACCTCAGAA
ATGACGGACTAAGATGAATGATACCACGAACAAATAACGGGGTAATTCAC
AAAGTCAACTATGATATAGACAAGTATGTATGGAGAAGTCGTTGTAATAT
GTGAGGGAGGACAATACCATTGGGATAGATGTAATTATAAAGGTTTTTAG
AAGTTATGAACATCAGACGTAGACGTAGGATTATGTGTAGCTCAATGACC
AGAATAAGGTATCTA
back to top