EY675060

Overview
NameEY675060
Unique NameEY675060
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1019
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675060 vs. ExPASy Swiss-Prot
Match: IDH_AZOVI (Isocitrate dehydrogenase [NADP] OS=Azotobacter vinelandii GN=icd PE=1 SV=5)

HSP 1 Score: 209.534 bits (532), Expect = 2.891e-55
Identity = 104/120 (86.67%), Postives = 111/120 (92.50%), Query Frame = 1
Query:   22 RTRKGLDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLVEENFLRWDSLGEFLALAASLEHLGVNYNNPKALVLSKTLDQATGQFLDNNKSPSRK 381
            R R+G DTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLM+GGGLFETGAGGSAPKHVQQ +EE +LRWDSLGEFLALAASLEHLG  Y NPKALVL+ TLDQATG+ LDNNKSP+RK
Sbjct:  531 RIREGKDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMSGGGLFETGAGGSAPKHVQQFLEEGYLRWDSLGEFLALAASLEHLGNAYKNPKALVLASTLDQATGKILDNNKSPARK 650          

HSP 2 Score: 25.7942 bits (55), Expect = 2.891e-55
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 2
Query:  380 KVGNIDNRGRHF 415
            KVG IDNRG HF
Sbjct:  650 KVGEIDNRGSHF 661          
BLAST of EY675060 vs. ExPASy Swiss-Prot
Match: IDH2_COLMA (Isocitrate dehydrogenase [NADP] 2 OS=Colwellia maris GN=icd2 PE=1 SV=3)

HSP 1 Score: 193.741 bits (491), Expect = 2.579e-50
Identity = 97/120 (80.83%), Postives = 104/120 (86.67%), Query Frame = 1
Query:   22 RTRKGLDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLVEENFLRWDSLGEFLALAASLEHLGVNYNNPKALVLSKTLDQATGQFLDNNKSPSRK 381
            R  KG D ISVTGNVLRDYLTDLFPI+ELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQ  +EN LRWDSLGEFLALAASLEH+ V   N +A +L+ TLD ATG+FLD NKSPSRK
Sbjct:  533 RVAKGEDAISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFEKENHLRWDSLGEFLALAASLEHVAVTTGNARAQILADTLDAATGKFLDTNKSPSRK 652          

HSP 2 Score: 25.0238 bits (53), Expect = 2.579e-50
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 2
Query:  380 KVGNIDNRGRHF 415
            KVG +DNRG HF
Sbjct:  652 KVGELDNRGSHF 663          
BLAST of EY675060 vs. ExPASy Swiss-Prot
Match: IDH_COREF (Isocitrate dehydrogenase [NADP] OS=Corynebacterium efficiens GN=icd PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.978e-45
Identity = 90/121 (74.38%), Postives = 100/121 (82.64%), Query Frame = 1
Query:   19 ERTRKGLDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLVEENFLRWDSLGEFLALAASLEHLGVNYNNPKALVLSKTLDQATGQFLDNNKSPSRK 381
            +R R+G DTISVTGNVLRDY TDLFPI+ELGTSAKMLS+VPLM GGGLFETGAGGSAPKHVQQ++EEN LRWDSLGEFLALA S  H     NN KA VL+  LD+AT + L+  KSPSRK
Sbjct:  517 DRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLMAGGGLFETGAGGSAPKHVQQVIEENHLRWDSLGEFLALAESFRHELNTRNNTKAGVLADALDRATEKLLNEEKSPSRK 637          

HSP 2 Score: 25.7942 bits (55), Expect = 2.978e-45
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 2
Query:  380 KVGNIDNRGRHF 415
            KVG IDNRG HF
Sbjct:  637 KVGEIDNRGSHF 648          
BLAST of EY675060 vs. ExPASy Swiss-Prot
Match: IDH_CORGL (Isocitrate dehydrogenase [NADP] OS=Corynebacterium glutamicum GN=icd PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.119e-44
Identity = 90/121 (74.38%), Postives = 99/121 (81.82%), Query Frame = 1
Query:   19 ERTRKGLDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLVEENFLRWDSLGEFLALAASLEHLGVNYNNPKALVLSKTLDQATGQFLDNNKSPSRK 381
            +R R+G DTISVTGNVLRDY TDLFPI+ELGTSAKMLS+VPLM GGGLFETGAGGSAPKHVQQ+ EEN LRWDSLGEFLALA S  H   N  N KA VL+  LD+AT + L+  KSPSRK
Sbjct:  526 DRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLMAGGGLFETGAGGSAPKHVQQVQEENHLRWDSLGEFLALAESFRHELNNNGNTKAGVLADALDKATEKLLNEEKSPSRK 646          

HSP 2 Score: 25.7942 bits (55), Expect = 1.119e-44
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 2
Query:  380 KVGNIDNRGRHF 415
            KVG IDNRG HF
Sbjct:  646 KVGEIDNRGSHF 657          
The following BLAST results are available for this feature:
BLAST of EY675060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IDH_AZOVI2.891e-5586.67Isocitrate dehydrogenase [NADP] OS=Azotobacter vin... [more]
IDH2_COLMA2.579e-5080.83Isocitrate dehydrogenase [NADP] 2 OS=Colwellia mar... [more]
IDH_COREF2.978e-4574.38Isocitrate dehydrogenase [NADP] OS=Corynebacterium... [more]
IDH_CORGL1.119e-4474.38Isocitrate dehydrogenase [NADP] OS=Corynebacterium... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-D12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675060 ID=EY675060; Name=EY675060; organism=Citrus sinensis; type=EST; length=1019bp
CGATGAAGTTCACCCTGGGAGCGCACCCGCAAGGGCCTGGACACCATCTC
GGTGACCGGCAACGTATTGCGCGACTACCTGACTGACCTGTTCCCGATCA
TGGAACTGGGCACCAGCGCCAAGATGCTGTCGATCGTGCCACTGATGAAC
GGTGGCGGCCTGTTCGAAACCGGTGCCGGCGGTTCGGCTCCGAAGCACGT
ACAGCAACTGGTTGAAGAAAACTTCCTGCGCTGGGATTCCCTGGGCGAGT
TCCTGGCCCTGGCCGCGTCCCTCGAGCATTTGGGTGTGAACTACAACAAC
CCGAAAGCCCTGGTGCTGTCCAAGACCCTGGACCAGGCCACCGGCCAGTT
CCTCGACAACAACAAGTCACCATCGCGCAAAAGTCGGCAACATCGACAAC
CGCGGCCGCCACTTCTACCTGGCTCTGTACTGGGCTCAAGCCCTGGCCGC
CCAAACGGAAGAAACTGGCACTGGCAGCGCAAGTTTGGCGAAATGGCCCA
AACCCTGGACCGCGAAACAAGCCAACCCTCGTTTGCCGAGCTCACCCCGT
TCAGGGCAAGCCAATGGACATCGGTGGCTACTAAGCCCCCAACCCCAGAA
CTTGACCGCAAGGGCCCTGGCCCCCGAGCCCCCACCCTCAACGCGGCAAT
CGCTTGCCCTGGGTTGTTAAGGGTTGAGGGATGCAAAAAAAAAAACCGAG
CCCCGGTGGAAGGGGTTTCCATATTAGCGAAAATAAGAAATTTTAAAGAA
GAAAACGCCAAGCCAAAGGGGGGGACTACGAAAGGGGAGAAGGACGAAAA
GAGACGAGAACTCAAGAAATAGAGACCAGCTAACCATGACAGGGATACAA
CAGACAACGCGCACATATCCGCACGTTCGCCGCAGTCGGAAACAAGGGAA
ACAAGAGGGCGACGGAATAGCAGAAGGGTAAGGAGAGGTAACACGGCAAC
GAGCTGCCACGAGGACGCGGAATGACTGAGGCGTTAGTGAGATGCAGATT
AACGATCATGGAGCGCTAT
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