EY675056
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 5.576e-26 Identity = 49/70 (70.00%), Postives = 61/70 (87.14%), Query Frame = 2 Query: 431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640 L+ G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F+R+IGF+ V+ ISF Sbjct: 103 LEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISF 172 HSP 2 Score: 77.0258 bits (188), Expect = 1.860e-13 Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 3 Query: 27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152 C VWPP GLKK+ETLSYLPPLSDEAL KEI YL+R+ WIPC Sbjct: 57 CMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPC 98
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 4.720e-25 Identity = 51/77 (66.23%), Postives = 62/77 (80.52%), Query Frame = 2 Query: 419 WVA*LQ---KGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640 W+ L+ KG+V+RE+H SPGYYDGRYWTMWKLPM+GCTDA QV KEV E +KEYPH+F+RIIGF+ V+ ISF Sbjct: 96 WIPCLEFCPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISF 172 HSP 2 Score: 69.707 bits (169), Expect = 2.970e-11 Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 3 Query: 27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152 C VWP G+KKFETLSYLP + DEAL+K+I YLLRS WIPC Sbjct: 58 CMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPC 99
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 6.165e-25 Identity = 49/76 (64.47%), Postives = 62/76 (81.58%), Query Frame = 2 Query: 431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISFPCWPAP 658 L+ G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGF+ V+ ISF + P Sbjct: 2 LEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 6.165e-25 Identity = 49/73 (67.12%), Postives = 61/73 (83.56%), Query Frame = 2 Query: 440 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISFPCWPAP 658 G+V+REH+SSPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGF+ V+ +SF + P Sbjct: 95 GFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPP 167 HSP 2 Score: 72.7886 bits (177), Expect = 3.509e-12 Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 3 Query: 27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152 C VWP G+KKFETLSYLPPLS EALLK++ YL+RS W+PC Sbjct: 47 CMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPC 88
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 8.051e-25 Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = 2 Query: 431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISFPCWPAP 658 L+ G+VYREHH SPGYYDGRYWTMWKLPM+GCTDA+QVLKE+ E + YP++F+RIIGF+ V+ ISF + P Sbjct: 101 LEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKPP 176 HSP 2 Score: 70.0922 bits (170), Expect = 2.274e-11 Identity = 30/42 (71.43%), Postives = 31/42 (73.81%), Query Frame = 3 Query: 27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152 C VWP TG KKFETLSYLP L D L KE+ YLLR GWIPC Sbjct: 55 CMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPC 96
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 8.051e-25 Identity = 49/76 (64.47%), Postives = 62/76 (81.58%), Query Frame = 2 Query: 431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISFPCWPAP 658 L+ G+VYREH +SPGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGF+ V+ ISF + P Sbjct: 101 LEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176 HSP 2 Score: 68.1662 bits (165), Expect = 8.642e-11 Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 3 Query: 27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152 C VWPP G KKFETLSYLP L+D L KE+ YL+R+ WIPC Sbjct: 55 CMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPC 96
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.052e-24 Identity = 48/73 (65.75%), Postives = 61/73 (83.56%), Query Frame = 2 Query: 440 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISFPCWPAP 658 G+++REH++SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VRIIGF+ V+ +SF + P Sbjct: 94 GFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPP 166 HSP 2 Score: 72.7886 bits (177), Expect = 3.509e-12 Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 3 Query: 27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152 C VWP G+KKFETLSYLPPLS EALLK++ YL+RS W+PC Sbjct: 46 CMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPC 87
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 1.052e-24 Identity = 49/73 (67.12%), Postives = 61/73 (83.56%), Query Frame = 2 Query: 440 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISFPCWPAP 658 G+V+REH+SSPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGF+ V+ +SF + P Sbjct: 94 GFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRPP 166 HSP 2 Score: 70.4774 bits (171), Expect = 1.741e-11 Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 3 Query: 27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152 C VWP G+KKFETLSYLPPLS EAL K++ YL+RS W+PC Sbjct: 46 CMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPC 87
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.794e-24 Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 2 Query: 434 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640 ++G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGF+ V+ ISF Sbjct: 104 ERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISF 172 HSP 2 Score: 69.3218 bits (168), Expect = 3.879e-11 Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 3 Query: 27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152 C VWPP KK+ETLSYLP LS E LL EI YLL+SGW+PC Sbjct: 57 CMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPC 98
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.794e-24 Identity = 47/73 (64.38%), Postives = 61/73 (83.56%), Query Frame = 2 Query: 440 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISFPCWPAP 658 G+++REH++SPGYYDGRYWTMWKLPM+GCTDATQV+ EV EV+KEYP ++VRIIGF+ V+ +SF + P Sbjct: 33 GFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPP 105 The following BLAST results are available for this feature:
BLAST of EY675056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 95
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Sequences
The
following sequences are available for this feature:
EST sequence >EY675056 ID=EY675056; Name=EY675056; organism=Citrus sinensis; type=EST; length=992bpback to top |