EY675056

Overview
NameEY675056
Unique NameEY675056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length992
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675056_ssr177 microsatellite EY675056_ssr177:177..200. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.576e-26
Identity = 49/70 (70.00%), Postives = 61/70 (87.14%), Query Frame = 2
Query:  431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            L+ G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F+R+IGF+    V+ ISF
Sbjct:  103 LEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISF 172          

HSP 2 Score: 77.0258 bits (188), Expect = 1.860e-13
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 3
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP GLKK+ETLSYLPPLSDEAL KEI YL+R+ WIPC
Sbjct:   57 CMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPC 98          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.720e-25
Identity = 51/77 (66.23%), Postives = 62/77 (80.52%), Query Frame = 2
Query:  419 WVA*LQ---KGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            W+  L+   KG+V+RE+H SPGYYDGRYWTMWKLPM+GCTDA QV KEV E +KEYPH+F+RIIGF+    V+ ISF
Sbjct:   96 WIPCLEFCPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISF 172          

HSP 2 Score: 69.707 bits (169), Expect = 2.970e-11
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 3
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWP  G+KKFETLSYLP + DEAL+K+I YLLRS WIPC
Sbjct:   58 CMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPC 99          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.165e-25
Identity = 49/76 (64.47%), Postives = 62/76 (81.58%), Query Frame = 2
Query:  431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISFPCWPAP 658
            L+ G+VYREH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGF+    V+ ISF  +  P
Sbjct:    2 LEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.165e-25
Identity = 49/73 (67.12%), Postives = 61/73 (83.56%), Query Frame = 2
Query:  440 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISFPCWPAP 658
            G+V+REH+SSPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGF+    V+ +SF  +  P
Sbjct:   95 GFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPP 167          

HSP 2 Score: 72.7886 bits (177), Expect = 3.509e-12
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 3
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWP  G+KKFETLSYLPPLS EALLK++ YL+RS W+PC
Sbjct:   47 CMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPC 88          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 8.051e-25
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISFPCWPAP 658
            L+ G+VYREHH SPGYYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP++F+RIIGF+    V+ ISF  +  P
Sbjct:  101 LEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKPP 176          

HSP 2 Score: 70.0922 bits (170), Expect = 2.274e-11
Identity = 30/42 (71.43%), Postives = 31/42 (73.81%), Query Frame = 3
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWP TG KKFETLSYLP L D  L KE+ YLLR GWIPC
Sbjct:   55 CMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPC 96          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 8.051e-25
Identity = 49/76 (64.47%), Postives = 62/76 (81.58%), Query Frame = 2
Query:  431 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISFPCWPAP 658
            L+ G+VYREH +SPGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGF+    V+ ISF  +  P
Sbjct:  101 LEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176          

HSP 2 Score: 68.1662 bits (165), Expect = 8.642e-11
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 3
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP G KKFETLSYLP L+D  L KE+ YL+R+ WIPC
Sbjct:   55 CMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPC 96          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.052e-24
Identity = 48/73 (65.75%), Postives = 61/73 (83.56%), Query Frame = 2
Query:  440 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISFPCWPAP 658
            G+++REH++SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VRIIGF+    V+ +SF  +  P
Sbjct:   94 GFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPP 166          

HSP 2 Score: 72.7886 bits (177), Expect = 3.509e-12
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 3
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWP  G+KKFETLSYLPPLS EALLK++ YL+RS W+PC
Sbjct:   46 CMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPC 87          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.052e-24
Identity = 49/73 (67.12%), Postives = 61/73 (83.56%), Query Frame = 2
Query:  440 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISFPCWPAP 658
            G+V+REH+SSPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGF+    V+ +SF  +  P
Sbjct:   94 GFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRPP 166          

HSP 2 Score: 70.4774 bits (171), Expect = 1.741e-11
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 3
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWP  G+KKFETLSYLPPLS EAL K++ YL+RS W+PC
Sbjct:   46 CMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPC 87          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.794e-24
Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 2
Query:  434 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISF 640
            ++G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGF+    V+ ISF
Sbjct:  104 ERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISF 172          

HSP 2 Score: 69.3218 bits (168), Expect = 3.879e-11
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 3
Query:   27 CYMVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPC 152
            C  VWPP   KK+ETLSYLP LS E LL EI YLL+SGW+PC
Sbjct:   57 CMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPC 98          
BLAST of EY675056 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.794e-24
Identity = 47/73 (64.38%), Postives = 61/73 (83.56%), Query Frame = 2
Query:  440 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFEQQAPVEWISFPCWPAP 658
            G+++REH++SPGYYDGRYWTMWKLPM+GCTDATQV+ EV EV+KEYP ++VRIIGF+    V+ +SF  +  P
Sbjct:   33 GFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPP 105          
The following BLAST results are available for this feature:
BLAST of EY675056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
RBS_LACSA5.576e-2670.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MUSAC4.720e-2566.23Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SINAL6.165e-2564.47Ribulose bisphosphate carboxylase small chain (Fra... [more]
RBS2_WHEAT6.165e-2567.12Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS_GLYTA8.051e-2564.47Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1A_ARATH8.051e-2564.47Ribulose bisphosphate carboxylase small chain 1A, ... [more]
RBS_HORVU1.052e-2465.75Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_WHEAT1.052e-2467.12Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS8_NICPL1.794e-2471.01Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS3_WHEAT1.794e-2464.38Ribulose bisphosphate carboxylase small chain clon... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-D08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675056 ID=EY675056; Name=EY675056; organism=Citrus sinensis; type=EST; length=992bp
TTTATTAATTTTCCTGTGAGCTTGTATGTTACATGGTGTGGCCACCAACT
GGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGA
AGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCT
GCTTGGAATTCGAGTTGGAGGTCATTTCTCTCTCTCTCTCTCTCTCTCTC
TGTCTCTCTTAATATATACTATTATTTTGACGGAACCTTATCTATGTGCT
TTAGGAGAAAAATTACACATGTCATGAATCTATTGGTCAGAGATATCCAT
TCAATATCAAAACCTGCATTAACAATTGCTTACTTAAAATCTAAGCTTTT
GGGTTAAGCGGATTTTATCAGGCAAATGGGTGGTGATATTTGATTTTTTT
TTTTTTTGTTTTTTCTTTTGGGTGGCGTGACTGCAGAAAGGATGGGTGTA
CCGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAA
TGTGGAAACTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAG
GAGGTTGGGGAGGTCCAAAAGGAATACCCACATTCTTTCGTCCGAATTAT
CGGATTTGAACAACAAGCGCCAGTGGAGTGGATCAGTTTTCCTTGCTGGC
CAGCCCCCAGGCGTCCAAGGTTCCCAATTTAATTGTGGTAACCCCCCAGG
CCATATTGGTTGATTATTATTATGGGTAACCCCCCAAAAAGGATCTTTCA
AATCATGGGGGGTTCGGGTTTGGGTTTAATTTGTGAATTAAGGGCGGGGT
TGGCGGCGGGCCCAAAACTTTTTTGGGTTTTCCCCCCCCACCTTGGGGTT
TTTTTTTTTTTTTTTTTATTTTTTTAAAAAAATTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGCGGCCCC
CCCCCCTAAGGAGGGAATAACAAACCACGCTCTTTACAACGT
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