EY675050

Overview
NameEY675050
Unique NameEY675050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length258
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8519 contig Csv1_Contig8519:1..258. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
[Close]
BLAST of EY675050 vs. ExPASy Swiss-Prot
Match: GLTI_SALTY (Glutamate/aspartate periplasmic-binding protein OS=Salmonella typhimurium GN=gltI PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 6.015e-16
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:   19 RDSRVDFTVNIFEIGTRLLVKKDKDGKPSYSDFADLKGKNVVTTAGTTSERIIKAMNADKQMGMNVISAKDHGESFQMLE 258
            R  +  F+  IF +GTRLL KK  D K    DF DLKGK VV T+GTTSE ++  +N +++MGM +ISAKDHG+SF+ LE
Sbjct:  120 RQKQAAFSDTIFVVGTRLLTKKGGDIK----DFPDLKGKAVVVTSGTTSEILLHKLNEEQKMGMRIISAKDHGDSFRTLE 195
[Close]
BLAST of EY675050 vs. ExPASy Swiss-Prot
Match: GLTI_ECOLI (Glutamate/aspartate periplasmic-binding protein OS=Escherichia coli (strain K12) GN=gltI PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:   13 VIRDSRVDFTVNIFEIGTRLLVKKDKDGKPSYSDFADLKGKNVVTTAGTTSERIIKAMNADKQMGMNVISAKDHGESFQMLE 258
            V R  +  F+  IF +GTRLL KK  D K    DFA+LK K VV T+GTTSE ++  +N +++M M +ISAKDHG+SF+ LE
Sbjct:  118 VERQKQAAFSDTIFVVGTRLLTKKGGDIK----DFANLKDKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLE 195
The following BLAST results are available for this feature:
BLAST of EY675050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GLTI_SALTY6.015e-1653.75Glutamate/aspartate periplasmic-binding protein OS... [more]
GLTI_ECOLI1.134e-1451.22Glutamate/aspartate periplasmic-binding protein OS... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-C10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675050 ID=EY675050; Name=EY675050; organism=Citrus sinensis; type=EST; length=258bp
CCGGCCGGGTACGTGATCCGGGATTCCCGGGTCGACTTCACCGTCAATAT
CTTCGAAATCGGCACCCGTCTGCTGGTCAAGAAAGACAAGGATGGCAAGC
CGTCCTACAGCGATTTCGCTGACCTCAAAGGCAAGAACGTCGTGACCACC
GCCGGCACCACGTCCGAGCGCATCATCAAGGCGATGAACGCCGACAAGCA
GATGGGCATGAACGTCATCTCCGCCAAGGACCATGGTGAATCCTTCCAGA
TGCTGGAA
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