EY675042

Overview
NameEY675042
Unique NameEY675042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1078
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675042 vs. ExPASy Swiss-Prot
Match: MED31_ARATH (Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana GN=At5g19910 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 6.560e-62
Identity = 105/122 (86.07%), Postives = 115/122 (94.26%), Query Frame = 3
Query:   18 EEASDAPSSPKKVHKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYKNNQLRHI 383
            ++AS+ PS PK  +KDPD GRQRFLLELEF+QCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQN NFR AMAHPANKELAHRQQF++WKNY+NN+L+HI
Sbjct:    9 DDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWKNYRNNRLKHI 130          

HSP 2 Score: 22.3274 bits (46), Expect = 6.560e-62
Identity = 11/18 (61.11%), Postives = 12/18 (66.67%), Query Frame = 2
Query:  458 PVPTPVTAASGPTLSPMQ 511
            P P+  TAA  P LSPMQ
Sbjct:  153 PAPS-ATAALSPALSPMQ 169          
BLAST of EY675042 vs. ExPASy Swiss-Prot
Match: MED31_DICDI (Putative mediator of RNA polymerase II transcription subunit 31 OS=Dictyostelium discoideum GN=med31 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 3.425e-32
Identity = 56/97 (57.73%), Postives = 77/97 (79.38%), Query Frame = 3
Query:   84 RFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYKNNQL 374
            RF++ELEF+QCL+NP Y++YLAQNRYF+D+AF+ YL YLQYW++PEY KFI+YP  LYFL+LLQ   FR  + H  + +  H QQF+ W+ Y+NN++
Sbjct:   55 RFIMELEFIQCLSNPRYLNYLAQNRYFQDKAFVNYLVYLQYWKKPEYAKFIVYPQSLYFLDLLQEERFRQELNHSQSTDFIHEQQFYHWQYYRNNRM 151          
BLAST of EY675042 vs. ExPASy Swiss-Prot
Match: MED31_DANRE (Mediator of RNA polymerase II transcription subunit 31 OS=Danio rerio GN=med31 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 3.668e-26
Identity = 52/108 (48.15%), Postives = 70/108 (64.81%), Query Frame = 3
Query:   54 VHKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYKNNQLR 377
            V +  +  RQRF LELEFVQCLANP Y+++LAQ  Y  ++ F+ YLKYL YW+ PEY KF+ YPHCL+ LELLQ  +FR  + +    +    QQ   W++Y   + R
Sbjct:    4 VMETDEQARQRFQLELEFVQCLANPNYLNFLAQRGYLREKPFVNYLKYLLYWKEPEYAKFLKYPHCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRTR 111          
BLAST of EY675042 vs. ExPASy Swiss-Prot
Match: MED31_BOVIN (Mediator of RNA polymerase II transcription subunit 31 OS=Bos taurus GN=MED31 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.668e-26
Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 3
Query:   63 DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYKNNQLR 377
            D    R RF LELEFVQCLANP Y+++LAQ  YF+D+AF+ YLKYL YW+ PEY K++ YP CL+ LELLQ  +FR  + +    +    QQ   W++Y   ++R
Sbjct:   10 DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 114          
BLAST of EY675042 vs. ExPASy Swiss-Prot
Match: MED31_MOUSE (Mediator of RNA polymerase II transcription subunit 31 OS=Mus musculus GN=Med31 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 4.790e-26
Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 3
Query:   63 DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYKNNQLR 377
            D    R RF LELEFVQCLANP Y+++LAQ  YF+D+AF+ YLKYL YW+ PEY K++ YP CL+ LELLQ  +FR  + +    +    QQ   W++Y   ++R
Sbjct:   10 DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRVR 114          
BLAST of EY675042 vs. ExPASy Swiss-Prot
Match: MED31_HUMAN (Mediator of RNA polymerase II transcription subunit 31 OS=Homo sapiens GN=MED31 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 6.256e-26
Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 3
Query:   63 DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYKNNQLR 377
            D    R RF LELEFVQCLANP Y+++LAQ  YF+D+AF+ YLKYL YW+ PEY K++ YP CL+ LELLQ  +FR  + +    +    QQ   W++Y   ++R
Sbjct:   10 DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKDPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 114          
BLAST of EY675042 vs. ExPASy Swiss-Prot
Match: MED31_XENTR (Mediator of RNA polymerase II transcription subunit 31 OS=Xenopus tropicalis GN=med31 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 3.105e-25
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:   78 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYKNNQLR 377
            R RF LELEFVQCLANP Y+++LAQ  YF+D++F+ YLKYL YW+ PEY K++ YP CL+ LELLQ  +FR  + +    +    QQ   W++Y   ++R
Sbjct:   12 RIRFQLELEFVQCLANPNYLNFLAQRGYFKDKSFVNYLKYLLYWKDPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 111          
BLAST of EY675042 vs. ExPASy Swiss-Prot
Match: MD31B_XENLA (Mediator of RNA polymerase II transcription subunit 31-B OS=Xenopus laevis GN=med31-B PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 3.105e-25
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:   78 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYKNNQLR 377
            R RF LELEFVQCLANP Y+++LAQ  YF+D++F+ YLKYL YW+ PEY K++ YP CL+ LELLQ  +FR  + +    +    QQ   W++Y   ++R
Sbjct:   13 RIRFQLELEFVQCLANPNYLNFLAQRGYFKDKSFVNYLKYLLYWKDPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 112          
BLAST of EY675042 vs. ExPASy Swiss-Prot
Match: MD31A_XENLA (Mediator of RNA polymerase II transcription subunit 31-A OS=Xenopus laevis GN=med31-A PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 6.917e-25
Identity = 49/100 (49.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:   78 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYKNNQLR 377
            R RF LELEFVQCLANP Y+++LAQ  YF+D+ F+ Y+KYL YW+ PEY K++ YP CL+ LELLQ  +FR  + +    +    QQ   W++Y   ++R
Sbjct:   12 RIRFQLELEFVQCLANPNYLNFLAQRGYFKDKPFVNYMKYLLYWKEPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRVR 111          
BLAST of EY675042 vs. ExPASy Swiss-Prot
Match: MED31_DROME (Mediator of RNA polymerase II transcription subunit 31 OS=Drosophila melanogaster GN=MED31 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 3.433e-24
Identity = 47/102 (46.08%), Postives = 73/102 (71.57%), Query Frame = 3
Query:   78 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYKNNQLRHI 383
            ++R+ +ELEFVQCL+NP Y+++LAQ  +F+D++FI YLKYLQYW+ P+Y K++MYP CLYFL+LLQ  +FR  + +    +    Q    W++Y   +++ I
Sbjct:   19 KRRWQIELEFVQCLSNPNYLNFLAQRGFFKDQSFINYLKYLQYWKEPDYAKYLMYPMCLYFLDLLQYEHFRREIVNSQCCKFIDDQAILQWQHYTRKRIKLI 120          
The following BLAST results are available for this feature:
BLAST of EY675042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
MED31_ARATH6.560e-6286.07Mediator of RNA polymerase II transcription subuni... [more]
MED31_DICDI3.425e-3257.73Putative mediator of RNA polymerase II transcripti... [more]
MED31_DANRE3.668e-2648.15Mediator of RNA polymerase II transcription subuni... [more]
MED31_BOVIN3.668e-2649.52Mediator of RNA polymerase II transcription subuni... [more]
MED31_MOUSE4.790e-2649.52Mediator of RNA polymerase II transcription subuni... [more]
MED31_HUMAN6.256e-2649.52Mediator of RNA polymerase II transcription subuni... [more]
MED31_XENTR3.105e-2550.00Mediator of RNA polymerase II transcription subuni... [more]
MD31B_XENLA3.105e-2550.00Mediator of RNA polymerase II transcription subuni... [more]
MD31A_XENLA6.917e-2549.00Mediator of RNA polymerase II transcription subuni... [more]
MED31_DROME3.433e-2446.08Mediator of RNA polymerase II transcription subuni... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-C01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675042 ID=EY675042; Name=EY675042; organism=Citrus sinensis; type=EST; length=1078bp
CCGCTGCCAAGGACCCCGAAGAAGCATCCGATGCCCCATCCTCGCCAAAG
AAGGTGCATAAAGATCCAGACGACGGGAGACAACGCTTTTTGCTTGAACT
GGAATTCGTTCAATGTCTTGCTAATCCCACTTACATTCACTATTTGGCTC
AGAATCGCTATTTTGAAGACGAGGCTTTCATTGGTTACTTGAAATATCTT
CAGTACTGGCAACGGCCGGAGTACATTAAATTTATAATGTATCCACATTG
CCTCTATTTTCTTGAACTTCTACAAAATGCAAACTTCCGCAATGCTATGG
CACATCCTGCCAACAAGGAGTTGGCACATAGGCAGCAATTCTTTTTCTGG
AAGAACTATAAAAACAATCAACTAAGGCACATTTTACCAAGGCCTCTTCC
TGAACCTGCTGAGGCTCCACCACCCTGCTGCTGCTCCACCTCTGCCACCT
GGCCCAACCTGTGCCGACTCCTGTGACAGCTGCTTCAGGGCCCACCCTTT
CTCCTATGCAAGTAATGGAATTTCCCCCAGGATCAGACTCTGAATGAAAA
CAAGATATGAATGAGTACCAACTTTGATTAAAAAAAAAAGAAAAAAGATG
GGTGAATTGGCGAAAAATTCCTGGACCTTCAAACTAAGAAAAAATGCTTA
TTTGAAAAAAGGCAGGTTTATAAGGGGTATTTAAATCCAAGCAGAGTAAG
GGGGAAAATACTCGGGAAGGATCAACACATGTATCAGGAACCGGAGAGAA
GTTCAAATTGAGAGGGGGGGGAGGGCACAACATAGATAAAATAATGGTAC
AACGAACCCAATCATCCTCGCTTTTCAACGGCGGCGCCGTACTGATTAGG
AGACATACGGCTGGGTAGGAAAGCTTACAAATGGTCAGGGGACACACACG
AAGTATGGAAAACGTAGGTGGATAAATCACGGGCTATGAGGGGCAAGAGA
AGAAGCCACGAGGGGGAGGAGGAGGGGCAGGCTGGGGCAATGCCCTCGCA
CCCGACGATACACGGGCGACCAGTAGTACGCAGATGACGAAAAAGAGAGA
TAGAACGGAGGATNCGGAACCGGAGTAA
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