EY675030

Overview
NameEY675030
Unique NameEY675030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length984
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675030 vs. ExPASy Swiss-Prot
Match: SRR35_HUMAN (35 kDa SR repressor protein OS=Homo sapiens GN=SRRP35 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.357e-16
Identity = 41/91 (45.05%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  141 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAETRKRPEEMRQRHR 413
            SL +RN+    RPE+LR  F R+G + DVY+P D+YT  PRGFA+VQF D  +A +A +++N K   GR+I +  A   RK P +M+ + R
Sbjct:   11 SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101          
BLAST of EY675030 vs. ExPASy Swiss-Prot
Match: SF13A_MOUSE (Splicing factor, arginine/serine-rich 13A OS=Mus musculus GN=Sfrs13a PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.315e-16
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 3
Query:  141 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAETRKRPEEMRQR 407
            SL VRN+  D R E+LR  F R+G + DVY+P D+YT  PRGFA+VQF D  +A +A H+++ K   GR+I +  A   RK P +M+ +
Sbjct:   11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAK 99          
BLAST of EY675030 vs. ExPASy Swiss-Prot
Match: SF13A_HUMAN (Splicing factor, arginine/serine-rich 13A OS=Homo sapiens GN=SFRS13A PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.315e-16
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 3
Query:  141 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAETRKRPEEMRQR 407
            SL VRN+  D R E+LR  F R+G + DVY+P D+YT  PRGFA+VQF D  +A +A H+++ K   GR+I +  A   RK P +M+ +
Sbjct:   11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAK 99          
BLAST of EY675030 vs. ExPASy Swiss-Prot
Match: SFRS2_RAT (Splicing factor, arginine/serine-rich 2 OS=Rattus norvegicus GN=Sfrs2 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.825e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  141 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 368
            SL V N+     P+ LR  FE++G V DVY+P+D YT E RGFAFV+F D  +A +A   M+G    GRE+ V +A
Sbjct:   15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90          
BLAST of EY675030 vs. ExPASy Swiss-Prot
Match: SFRS2_PIG (Splicing factor, arginine/serine-rich 2 OS=Sus scrofa GN=SFRS2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.825e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  141 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 368
            SL V N+     P+ LR  FE++G V DVY+P+D YT E RGFAFV+F D  +A +A   M+G    GRE+ V +A
Sbjct:   15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90          
BLAST of EY675030 vs. ExPASy Swiss-Prot
Match: SFRS2_PANTR (Splicing factor, arginine/serine-rich 2 OS=Pan troglodytes GN=SFRS2 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.825e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  141 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 368
            SL V N+     P+ LR  FE++G V DVY+P+D YT E RGFAFV+F D  +A +A   M+G    GRE+ V +A
Sbjct:   15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90          
BLAST of EY675030 vs. ExPASy Swiss-Prot
Match: SFRS2_MOUSE (Splicing factor, arginine/serine-rich 2 OS=Mus musculus GN=Sfrs2 PE=1 SV=4)

HSP 1 Score: 69.3218 bits (168), Expect = 3.825e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  141 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 368
            SL V N+     P+ LR  FE++G V DVY+P+D YT E RGFAFV+F D  +A +A   M+G    GRE+ V +A
Sbjct:   15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90          
BLAST of EY675030 vs. ExPASy Swiss-Prot
Match: SFRS2_HUMAN (Splicing factor, arginine/serine-rich 2 OS=Homo sapiens GN=SFRS2 PE=1 SV=4)

HSP 1 Score: 69.3218 bits (168), Expect = 3.825e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  141 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 368
            SL V N+     P+ LR  FE++G V DVY+P+D YT E RGFAFV+F D  +A +A   M+G    GRE+ V +A
Sbjct:   15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90          
BLAST of EY675030 vs. ExPASy Swiss-Prot
Match: SFRS2_CHICK (Splicing factor, arginine/serine-rich 2 OS=Gallus gallus GN=SFRS2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.825e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  141 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 368
            SL V N+     P+ LR  FE++G V DVY+P+D YT E RGFAFV+F D  +A +A   M+G    GRE+ V +A
Sbjct:   15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90          
BLAST of EY675030 vs. ExPASy Swiss-Prot
Match: SFRS2_BOVIN (Splicing factor, arginine/serine-rich 2 OS=Bos taurus GN=SFRS2 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.825e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  141 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 368
            SL V N+     P+ LR  FE++G V DVY+P+D YT E RGFAFV+F D  +A +A   M+G    GRE+ V +A
Sbjct:   15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90          
The following BLAST results are available for this feature:
BLAST of EY675030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SRR35_HUMAN1.357e-1645.0535 kDa SR repressor protein OS=Homo sapiens GN=SRR... [more]
SF13A_MOUSE2.315e-1646.07Splicing factor, arginine/serine-rich 13A OS=Mus m... [more]
SF13A_HUMAN2.315e-1646.07Splicing factor, arginine/serine-rich 13A OS=Homo ... [more]
SFRS2_RAT3.825e-1147.37Splicing factor, arginine/serine-rich 2 OS=Rattus ... [more]
SFRS2_PIG3.825e-1147.37Splicing factor, arginine/serine-rich 2 OS=Sus scr... [more]
SFRS2_PANTR3.825e-1147.37Splicing factor, arginine/serine-rich 2 OS=Pan tro... [more]
SFRS2_MOUSE3.825e-1147.37Splicing factor, arginine/serine-rich 2 OS=Mus mus... [more]
SFRS2_HUMAN3.825e-1147.37Splicing factor, arginine/serine-rich 2 OS=Homo sa... [more]
SFRS2_CHICK3.825e-1147.37Splicing factor, arginine/serine-rich 2 OS=Gallus ... [more]
SFRS2_BOVIN3.825e-1147.37Splicing factor, arginine/serine-rich 2 OS=Bos tau... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-A09-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675030 ID=EY675030; Name=EY675030; organism=Citrus sinensis; type=EST; length=984bp
GCTGTGCTATGAGAACGTACAGTCCACCATACTATAGTCCTCCGAGGAGG
GGATACGGAGGCCGAGGAAGAAGCCCTCCGAGAAGAGGATACGGTGGCGG
TGGAGGAGGCTATGGAAGACGCAAGGAACAGAATCATGGTAGCCTTTTGG
TTCGAAACATTCCGCTTGATTGCAGGCCTGAAGAACTCCGTGCTCCATTC
GAGAGGTTTGGGGTTGTTAGGGATGTCTACCTTCCTAAGGATTACTACAC
TGGGGAACCTCGAGGGTTTGCATTTGTGCAATTTGTGGATCCTTATGAAG
CTGCTGAAGCTCAACACCATATGAATGGGAAACGTTTTGCTGGGAGGGAA
ATATCTGTAGTCCTTGCTGCAGAGACAAGGAAAAGGCCGGAGGAGATGCG
CCAAAGACATAGGTTTAGAGGAGGGTCGAGCTATGGAGGACCGCGATCAT
CTTATTATGGACGTTATCGGTCCCGCTCACTATCCCGTTCACGTTCCCCT
CATCATCCTCAAGGTTCTAGAAGCCGGTACCGCTCTAGATCTTACACTCC
TGTCCCAAGACAACACGAAGATTACTCAATTTCTCCTCGGAGAAGGCACA
TAGAACACCCCCGGATCACCAAGAGGTCCTCCCCAAGAGCGAGGGGCTGG
ATACCGTCGTAGATTCTATTCTCCTGGATATGATGATTCTGGGGATCGTC
GTAACCCAAATGGGAAGGGGTTATGGGGGAAAATCTGGGTTTGAAGGGAA
CCCAGGCCCCCTGGGAGGGCCCCCGCCCCCCCGGGGAAGGGCAAAGGGCC
CCCCCCGGGGTTTAAAATTTAGGGGCTAGGGGCCACCCCCAACTTGTCCC
CCCAAAAATATCCCAAAAAAAAGAGATTAGGGGAAAATTTTAAAGGGGGG
AAGGGGGGAAAAATTTTTTTTTTTTTGTTTTTTTTTTGGTTTTTTTCAAA
AAATTATTTCACACCCCATGTGGTGCTTGGTGGG
back to top