EY675028

Overview
NameEY675028
Unique NameEY675028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1007
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675028 vs. ExPASy Swiss-Prot
Match: GBF1_ARATH (G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.147e-34
Identity = 72/129 (55.81%), Postives = 84/129 (65.12%), Query Frame = 3
Query:  177 MGTGEENXXXXXXXXXXXXQEIPTTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMXXXXXXXXXXXXXXGKGPEAKDRASAKKSKGNSRR 563
            MGT E+             QE+P TP Y DW +SMQA+YG G TP PFF S V SP+PHPY+WG+QH +MPPYGTPVPY A+YPPG VYAHPSM               K P AKD+AS KKSKGNS++
Sbjct:    1 MGTSEDKMPFKTTKPTSSAQEVPPTP-YPDWQNSMQAYYGGGGTPNPFFPSPVGSPSPHPYMWGAQHHMMPPYGTPVPYPAMYPPGAVYAHPSM-----PMPPNSGPTNKEP-AKDQASGKKSKGNSKK 122          
BLAST of EY675028 vs. ExPASy Swiss-Prot
Match: CPRF3_PETCR (Light-inducible protein CPRF3 OS=Petroselinum crispum GN=CPRF3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.100e-20
Identity = 57/138 (41.30%), Postives = 73/138 (52.90%), Query Frame = 3
Query:  177 MGTGEENXXXXXXXXXXXXQEIP-TTPSYADWSSSMQAFYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSMXXXXXXXXXXXXXXGKGPEAKDRASAKKSKGNSRR*SWRD*KG 587
            M  GEE             +E P TT  + D  SSMQA+YG GA P  F+ASTV SP+PHPY+W +QH  + PYG P+ Y A++ PGG++ HP +               K  + K R SAKKS G S   S+   KG
Sbjct:    1 MSDGEEGTPMKHPKPASSVEEAPITTTPFPDLLSSMQAYYG-GAAPAAFYASTVGSPSPHPYMWRNQHRFILPYGIPMQYPALFLPGGIFTHPIVPTDPNLAPTSGEVGRKISDEKGRTSAKKSIGVSGSTSFAVDKG 137          
BLAST of EY675028 vs. ExPASy Swiss-Prot
Match: CPRF1_PETCR (Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.731e-15
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  258 YADWSSSMQAFYGAGATPPPFFASTVAS-PTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPSM 458
            Y DW++ MQA+YG     PP+F   VAS  +PHPY+WG   P+MPPYG  VPY A+Y  GGVYAHP +
Sbjct:   32 YPDWAA-MQAYYGPRVALPPYFNPAVASGQSPHPYMWGPPQPVMPPYG--VPYAALYAHGGVYAHPGV 96          
BLAST of EY675028 vs. ExPASy Swiss-Prot
Match: HBP1A_WHEAT (Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.591e-12
Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = 3
Query:  246 TTPSYADWSSSMQAFYGAGATPPP-FFASTVASPTPHPYLWGSQHPLMPPYGTPVPYQAIYPPGGVYAHPS 455
            T P Y +W      F G  A PP  FF   VA+   HPY+WG QH ++PPYGTP P   +YPPG VYAHP+
Sbjct:   29 TAPVYPEWPG----FQGYPAMPPHGFFPPPVAAGQAHPYMWGPQH-MVPPYGTPPPPYMMYPPGTVYAHPT 94          
The following BLAST results are available for this feature:
BLAST of EY675028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GBF1_ARATH1.147e-3455.81G-box-binding factor 1 OS=Arabidopsis thaliana GN=... [more]
CPRF3_PETCR2.100e-2041.30Light-inducible protein CPRF3 OS=Petroselinum cris... [more]
CPRF1_PETCR7.731e-1555.88Common plant regulatory factor 1 OS=Petroselinum c... [more]
HBP1A_WHEAT3.591e-1250.70Transcription factor HBP-1a OS=Triticum aestivum P... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-A05-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675028 ID=EY675028; Name=EY675028; organism=Citrus sinensis; type=EST; length=1007bp
CCCACGCGTCCGGCCACGAAAGCAGGATGTGGTTCTGAATGCTCTGCTGC
AGTTACCTACTTGTTTCTTCAGTTATTGTTGAACCTTGGCTCTCTATTCA
TTTGGTGATTCATAGAGTCTACTTAGGAGACATCAAAAGTCAAATCATTA
GGTCTTGAAGCTTTGAGATCAACTGGATGGGGACAGGGGAAGAGAACACT
TCTGCTAAGACTGCCAAAACAGCTTCTTCAACTCAGGAGATACCAACCAC
ACCCTCGTACGCTGATTGGTCCAGCTCTATGCAGGCTTTCTATGGTGCTG
GGGCTACGCCACCTCCATTTTTTGCTTCCACCGTTGCTTCTCCAACTCCT
CATCCCTATCTGTGGGGAAGCCAGCATCCTTTAATGCCACCATATGGCAC
CCCAGTTCCATACCAAGCTATATATCCTCCAGGGGGAGTATATGCACATC
CTAGCATGGCTACGACTCCAACAGCAGCACCAACAAATACAGAGCCGGAA
GGGAAGGGACCTGAAGCAAAGGACCGGGCTTCAGCTAAAAAATCCAAAGG
GAACTCAAGGAGGTAAAGCTGGAGAGATTGAAAGGGCAACTTCTGGTTCT
GGGAAATGACGGTGTCTCTCAAAGTGCTGAAAGTGGTAATGACGGTTCAT
CTGATGCAAGTGATGAAAATGGGTAACCAGCAGGGAGTTTGGTGGGGGGG
AAGAAAAGGAACCTTTGAACCAAATGCTTTGCAAAATCCCAACACGGGAA
AAAAAACACACCCGGAAACCTGTTTCCAGGAATTCATGGCCCGGGGAAAC
CCTGGGATTCCCAAATGGCCGGGCCACATAAATTTCAAAAATTTGGGGAG
GGGGGATTTGGGGGGAAAAAACCCCCCCCCCGGGCGGGGCGGGCGGGGGG
GACCTGCCAAAAAAAAAGAGAAAAAAAAAAATCCCCCTTTTGGGGGGGGG
GCCCCCCCCCCCACCCCCCCAGTTTGTTGTCCCCCCCCCCCTCCGGTGGG
GGAGAAA
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