EY675026

Overview
NameEY675026
Unique NameEY675026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1010
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY675026_ssr307 microsatellite EY675026_ssr307:307..318. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY675026 vs. ExPASy Swiss-Prot
Match: PSBQ_SPIOL (Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.774e-43
Identity = 108/209 (51.67%), Postives = 133/209 (63.64%), Query Frame = 2
Query:   56 GLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLP-LKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQIDLRLKASYLRYDLNTYHFCLAQR*KTSPQNPPWKALPNHRQSLTRRQKLKNTPEAKK 679
            GLRG+S  QAVLEGS Q+SG NRL+ P+ SRVAV + G  +RAQQ S E ETSRRAM+G VAAG+ASGSFV+AVLA+A PI V            T NSD+ RD  LP  K+RF++QPL P            +ILNVK+ ID+KAWP +Q DLRL+ASYLRYDL T      +  K S Q    K L +   +L    K+K+  EA+K
Sbjct:   10 GLRGAS--QAVLEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSAEAETSRRAMLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSK-LFSSIDNLDHAAKIKSPTEAEK 215          
BLAST of EY675026 vs. ExPASy Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 5.161e-43
Identity = 108/210 (51.43%), Postives = 136/210 (64.76%), Query Frame = 2
Query:   56 GLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVA--RSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQIDLRLKASYLRYDLNTYHFCLAQR*KTSPQNPPWKALPNHRQSLTRRQKLKNTPEAKK 679
            GLRG+S  QAVLEGS Q++G NRLN    SRV+V   R+G  +RAQQ  + PE+SRR++IGLVAAG+A GSFV+AV A+A PIKV            T NSD+ RD  L LK+RF+IQPLSP           K+I+NVK  IDKKAWPYVQ DLRL+ASYLRYDLNT      +  K S ++   K L     +L    + K++P+A+K
Sbjct:   10 GLRGAS--QAVLEGSLQINGSNRLNI---SRVSVGSQRTGLVIRAQQNVSVPESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKDLTAK-LFQTIDNLDYAARSKSSPDAEK 213          
BLAST of EY675026 vs. ExPASy Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 1.700e-42
Identity = 98/168 (58.33%), Postives = 114/168 (67.86%), Query Frame = 2
Query:   56 GLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVA-RSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXX-TLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQIDLRLKASYLRYDLNT 553
            GL G+S   AVLEGS +++G +RLN   + RVAVA RS   VRAQQ+    ETSRR++IGLVAAG+A GSFVQAVLADA  IKV             T NSD+ RD  L LK+RF++QPL P           KDI+NVK LID+KAWPYVQ DLR KASYLRYDLNT
Sbjct:    6 GLHGAS--PAVLEGSLKINGSSRLNG--SGRVAVAQRSRLVVRAQQSE---ETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNT 166          

HSP 2 Score: 37.3502 bits (85), Expect = 1.700e-42
Identity = 23/44 (52.27%), Postives = 27/44 (61.36%), Query Frame = 3
Query:  555 IISA*PKDEKHPLKTLPGKLFQTIGNL*PGGKN*KTLPKPKKYY 686
            IIS+ PKDEK  LK L  KLF TI NL    K  K+  + +KYY
Sbjct:  167 IISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKK-KSPSQAEKYY 209          
BLAST of EY675026 vs. ExPASy Swiss-Prot
Match: PSBQ_ONOVI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis viciifolia GN=PSBQ PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 7.470e-34
Identity = 97/211 (45.97%), Postives = 122/211 (57.82%), Query Frame = 2
Query:   77 SQAVLEGSSQL-SGPNRLNAPSNSRVAVARSGFTVRAQQ---------ASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQIDLRLKASYLRYDLNTYHFCLAQR*KTSPQNPPWKALPNHRQSLTRRQKLKNTPEAKK 679
            +  +LEGS QL SG NR  + S+SR       F VRAQQ         ++ +P+++RRAM+GLVA G+AS SFVQAVLA+A PIKV            TLNSDE RDL LPLKERF+IQPLSP           K+I+ VK+ ID+K       DLRL+ASYLRYDLNT      +  K S +      L     +L    KLK+ P+A+K
Sbjct:    6 ASGLLEGSLQLMSGSNR--SSSSSRTRGPAGVFIVRAQQQEQQQGMSSSAADPQSNRRAMLGLVATGLASASFVQAVLAEAKPIKVGGPPPPSGGLGGTLNSDEARDLKLPLKERFYIQPLSPTEAAQRQRESAKEIVAVKKFIDQKLGHMFINDLRLRASYLRYDLNTVISSKPKEQKQSLKESSAGKLFQDIDNLDYAAKLKSAPQAEK 214          
BLAST of EY675026 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSJ (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.145e-34
Identity = 74/155 (47.74%), Postives = 97/155 (62.58%), Query Frame = 2
Query:   92 EGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQIDLRLKASYLRYDLNT 553
            +G    +GP R  A   SR+AV      VRA  A+ + +T RRA++GLVA G+A G+  QA LA+A  PIK+            TLNSD+ RD DLPL+ERF++QPL P           +DI+N+K LI+KK WP+V+ DLRL+ASYLRYDL T
Sbjct:   13 QGVQLPAGPRR--AGGRSRLAV------VRADAAAADVQTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKT 159          

HSP 2 Score: 35.039 bits (79), Expect = 9.145e-34
Identity = 21/44 (47.73%), Postives = 27/44 (61.36%), Query Frame = 3
Query:  555 IISA*PKDEKHPLKTLPGKLFQTIGNL*PGGKN*KTLPKPKKYY 686
            +I++ PKDEK  LK L GKLF TI  L    K  K+  + +KYY
Sbjct:  160 VINSKPKDEKKGLKDLTGKLFATIDGLDHAAKI-KSPEEAEKYY 202          
BLAST of EY675026 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 9.145e-34
Identity = 74/155 (47.74%), Postives = 97/155 (62.58%), Query Frame = 2
Query:   92 EGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQIDLRLKASYLRYDLNT 553
            +G    +GP R  A   SR+AV      VRA  A+ + +T RRA++GLVA G+A G+  QA LA+A  PIK+            TLNSD+ RD DLPL+ERF++QPL P           +DI+N+K LI+KK WP+V+ DLRL+ASYLRYDL T
Sbjct:   13 QGVQLPAGPRR--AGGRSRLAV------VRADAAAADVQTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLRERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKT 159          

HSP 2 Score: 35.039 bits (79), Expect = 9.145e-34
Identity = 21/44 (47.73%), Postives = 27/44 (61.36%), Query Frame = 3
Query:  555 IISA*PKDEKHPLKTLPGKLFQTIGNL*PGGKN*KTLPKPKKYY 686
            +I++ PKDEK  LK L GKLF TI  L    K  K+  + +KYY
Sbjct:  160 VINSKPKDEKKGLKDLTGKLFATIDGLDHAAKI-KSPEEAEKYY 202          
BLAST of EY675026 vs. ExPASy Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.458e-29
Identity = 88/205 (42.93%), Postives = 113/205 (55.12%), Query Frame = 2
Query:   71 SHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNE-PETSRRAMIGLVAAGVASGSFVQAVLADATP-IKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQIDLRLKASYLRYDLNTYHFCLAQR*KTSPQNPPWKALPNHRQSLTRRQKLKNTPEAKK 679
            + + A + G SQ   P+R  A S +R AV      VRA    +   +  RRA+IGLVA G+  G+  QA  A+    IK+            TLNSD+ RD DLPLKERF++QPL P           +DI+N+K LIDKKAWPYVQ DLRL+ASYLRYDL T      +  K S +    K L +    L    K+K+TPEA+K
Sbjct:    2 AQAMASMTGLSQGVLPSR-RADSRTRTAVV----IVRASAEGDAVAQAGRRAVIGLVATGIVGGALSQAARAETVKTIKIGAPPPPSGGLPGTLNSDQARDFDLPLKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGK-LFSTIDDLDHAAKIKSTPEAEK 200          
BLAST of EY675026 vs. ExPASy Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 9.153e-24
Identity = 77/204 (37.75%), Postives = 105/204 (51.47%), Query Frame = 2
Query:   71 SHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATP-IKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQIDLRLKASYLRYDLNTYHFCLAQR*KTSPQNPPWKALPNHRQSLTRRQKLKNTPEAKK 679
            + + A + G SQ   P   ++ + + V V R+  +    + +  P   R      + A  +S    QAV A+    IK+            TLNSD+ RD DLPLKERF++QPL P           +DI+N+K LIDKKAWPYVQ DLRL+ASYLRYDL T      +  K S +    K L +    L    K+K+TPEA+K
Sbjct:    2 AQAMASMTGLSQGVCPAAADSRTRTAVVVVRA--SAEGDRCAGGPRCDR------LVATASSPPLSQAVHAETVKTIKIGAPPPPSGGLPGTLNSDQTRDFDLPLKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGK-LFSTIDDLDHAAKMKSTPEAEK 196          
The following BLAST results are available for this feature:
BLAST of EY675026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSBQ_SPIOL1.774e-4351.67Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ2_ARATH5.161e-4351.43Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
PSBQ1_ARATH1.700e-4258.33Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ_ONOVI7.470e-3445.97Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSJ9.145e-3447.74Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSI9.145e-3447.74Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ1_MAIZE1.458e-2942.93Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ2_MAIZE9.153e-2437.75Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-005-A03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675026 ID=EY675026; Name=EY675026; organism=Citrus sinensis; type=EST; length=1010bp
AAGTTTCTGAAACCTGACTTAGTGAAAAATGGCACAAGCTATGGCGTCAA
TGGCTGGCTTACGTGGATCCTCCCACTCGCAGGCTGTTCTTGAAGGTAGC
TCCCAGCTCAGTGGCCCAAACCGCTTGAACGCCCCTAGCAACAGCAGAGT
TGCTGTGGCTCGCTCTGGTTTCACTGTTAGAGCCCAGCAGGCATCAAACG
AGCCTGAAACTAGCCGCCGTGCTATGATTGGTCTTGTTGCTGCAGGTGTG
GCCTCAGGTTCCTTTGTTCAAGCTGTACTTGCTGATGCCACTCCCATCAA
AGTTGGTCCTCCTCCTCCACCCTCTGGCGGATTGCCTGGAACGTTGAACT
CTGATGAGCCAAGAGACCTGGATCTGCCACTGAAGGAGAGGTTCTTCATC
CAACCACTTAGTCCAGCCCAGGCGGCAGAGAGAGCAAAGGCGTCAGCAAA
GGATATTCTTAATGTCAAGGAATTAATAGACAAGAAGGCCTGGCCCTATG
TTCAGATTGATCTCCGTCTCAAGGCCTCATACCTTCGCTATGACCTCAAC
ACCTATCATTTCTGCCTAGCCCAAAGATGAAAAACATCCCCTCAAAACCC
TCCCTGGAAAGCTCTTCCAAACCATCGGCAATCTTTGACCAGGCGGCAAA
AATTAAAAAACACTCCCGAAGCCAAAAAAATACTATGGCGGAAACTGGTT
TCTACCCCGAAACAGATGTTCCCCCCAAGGGGGGGGGTAAACCAAAAATT
AAAATTAATCTGGATGGTAAAACATATTTTTTTTTTATTTTTGGGGGGGG
AAACACCTTTTCTTGGGAAATTTTTTTGTGGGAAGCGCGGGGTTTTCCCC
CCCCAAAAGATATCAAGAAAAAAAATTTTTGCTCCAAAAAAAAAAAAAAA
AAAAAAAGGGGGGGGGGCCCCCCCCTAAAAGGGGAAACTCCCATGGTTTT
TACTATTACCCCCCGGGGTGCGGCGAGGCACCAGACACACTCCAAACCAC
CCTTCTTTTC
back to top