EY675023

Overview
NameEY675023
Unique NameEY675023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1024
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675023 vs. ExPASy Swiss-Prot
Match: CUL1_ARATH (Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 4.232e-69
Identity = 146/243 (60.08%), Postives = 172/243 (70.78%), Query Frame = 3
Query:   12 ELLENALSGCRALLREDKVQDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKSC*AACIYQ**RSFCRILQEEACSSACF*FVMLMMNHEKSISHQT*NNIVVEKFNPKREGRVTNFTLAKKKIKTAFEEKFSTINPKRAP 740
            +LLE   SGCRALLR+DKV DLSRMYRLYHKI +GLEPVAN+FKQH+TAEG  LVQQAED ATNQ  ++ +VQEQVLIRK+IELHDKYM YVT CF NHTLFHKALKEAFEIFCNK V GSSS+ELLATFCDNILKKGG+EKLSDEAIE+TLEK             F    +++      F       +HE+SI  +        +F  K EG VT+ TLA++  + +FE+   + NP   P
Sbjct:  262 QLLEKEHSGCRALLRDDKVDDLSRMYRLYHKILRGLEPVANIFKQHVTAEGNALVQQAEDTATNQVANTASVQEQVLIRKVIELHDKYMVYVTECFQNHTLFHKALKEAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLF-DRSANDDHERSILTKL-KQQCGGQFTSKMEGMVTDLTLAREN-QNSFEDYLGS-NPAANP 500          
BLAST of EY675023 vs. ExPASy Swiss-Prot
Match: CUL1_DICDI (Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.360e-18
Identity = 51/142 (35.92%), Postives = 74/142 (52.11%), Query Frame = 3
Query:   42 RALLREDKVQDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNK------AVGGSSSSELLATFCDNILKKGGNEKLSDE 449
            + LL +DK+ DL+RMY L  +IP+GLEP+    ++H+   G   +Q     ATN     G ++ +V I  ++++  KY E VT  F + T F  +L +A   F N+      A   S S ELLA F D +LKK  N     E
Sbjct:  299 QTLLEKDKIPDLTRMYSLLSRIPRGLEPLRTTLEKHVQNVG---LQAVSSIATN-----GVIEPKVYIETLLKVFKKYNELVTGAFRSDTGFVASLDKACRRFINENAVTIAAKSSSKSPELLARFTDFLLKKSPNNPEESE 432          

HSP 2 Score: 31.9574 bits (71), Expect = 9.360e-18
Identity = 13/20 (65.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:  493 YISDKDLFAEFYRKKLARRL 552
            YI DKD+F +FY K LA+RL
Sbjct:  446 YIEDKDVFQDFYSKMLAKRL 465          
BLAST of EY675023 vs. ExPASy Swiss-Prot
Match: CUL1_PONAB (Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.053e-15
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 3
Query:   48 LLREDKVQDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNK------AVGGSSSSELLATFCDNILKKGGNEKLSDEA-IEETLEK 473
            LL  DK +DL RMY L  +I  GL  +  + + HI  +G   +++  +AA N          ++ ++ ++++H KY   V + F N   F  AL +A   F N       A   S S ELLA +CD++LKK  + K  +EA +E+TL +
Sbjct:  310 LLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALN--------DPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKK--SSKNPEEAELEDTLNQ 448          

HSP 2 Score: 31.5722 bits (70), Expect = 5.053e-15
Identity = 13/20 (65.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:  493 YISDKDLFAEFYRKKLARRL 552
            YI DKD+F +FY K LA+RL
Sbjct:  455 YIEDKDVFQKFYAKMLAKRL 474          
BLAST of EY675023 vs. ExPASy Swiss-Prot
Match: CUL1_MOUSE (Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.053e-15
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 3
Query:   48 LLREDKVQDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNK------AVGGSSSSELLATFCDNILKKGGNEKLSDEA-IEETLEK 473
            LL  DK +DL RMY L  +I  GL  +  + + HI  +G   +++  +AA N          ++ ++ ++++H KY   V + F N   F  AL +A   F N       A   S S ELLA +CD++LKK  + K  +EA +E+TL +
Sbjct:  310 LLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALN--------DPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKK--SSKNPEEAELEDTLNQ 448          

HSP 2 Score: 31.5722 bits (70), Expect = 5.053e-15
Identity = 13/20 (65.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:  493 YISDKDLFAEFYRKKLARRL 552
            YI DKD+F +FY K LA+RL
Sbjct:  455 YIEDKDVFQKFYAKMLAKRL 474          
BLAST of EY675023 vs. ExPASy Swiss-Prot
Match: CUL1_HUMAN (Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.053e-15
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 3
Query:   48 LLREDKVQDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNK------AVGGSSSSELLATFCDNILKKGGNEKLSDEA-IEETLEK 473
            LL  DK +DL RMY L  +I  GL  +  + + HI  +G   +++  +AA N          ++ ++ ++++H KY   V + F N   F  AL +A   F N       A   S S ELLA +CD++LKK  + K  +EA +E+TL +
Sbjct:  310 LLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALN--------DPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKK--SSKNPEEAELEDTLNQ 448          

HSP 2 Score: 31.5722 bits (70), Expect = 5.053e-15
Identity = 13/20 (65.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:  493 YISDKDLFAEFYRKKLARRL 552
            YI DKD+F +FY K LA+RL
Sbjct:  455 YIEDKDVFQKFYAKMLAKRL 474          
BLAST of EY675023 vs. ExPASy Swiss-Prot
Match: CUL4B_HUMAN (Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.105e-14
Identity = 42/146 (28.77%), Postives = 84/146 (57.53%), Query Frame = 3
Query:   36 GCRALLREDKVQDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEK 473
            G   LL E+++QDLS +Y+L+ ++  G++ +   + ++I A G+ +V   E             +++ +++++++  DK    +  CF+ +  F  A+KEAFE F NK    +  +EL+A + D+ L + GN++ +DE +E+ L+K
Sbjct:  442 GLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPE-------------KDKTMVQELLDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKR--PNKPAELIAKYVDSKL-RAGNKEATDEELEKMLDK 571          

HSP 2 Score: 26.9498 bits (58), Expect = 1.105e-14
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  493 YISDKDLFAEFYRKKLARRL 552
            +I  KD+F  FY+K LA+RL
Sbjct:  578 FIYGKDVFEAFYKKDLAKRL 597          
BLAST of EY675023 vs. ExPASy Swiss-Prot
Match: CUL1_CAEEL (Cullin-1 OS=Caenorhabditis elegans GN=cul-1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.969e-13
Identity = 46/151 (30.46%), Postives = 78/151 (51.66%), Query Frame = 3
Query:   48 LLREDKVQDLSRMYRLYHKIPKGLEPVANVFKQHITAEG-TVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNK---------AVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLE 470
            LL + +  DLSRM++L  ++P GL+ +    + HI  EG   L + A +AAT+          ++ ++ ++E+H++Y   V   F N   F ++L +A   F N              + S+ELLA +CD +L+K  + K+ DEA  E L+
Sbjct:  311 LLVDKRDDDLSRMFKLCDRVPNGLDELRKSLENHIAKEGHQALERVAMEAATD---------AKLYVKTLLEVHERYQSLVNRSFKNEPGFMQSLDKAATSFINNNAVTKRAPPQAQLTKSAELLARYCDQLLRK--SSKMPDEAELEELQ 450          

HSP 2 Score: 29.6462 bits (65), Expect = 1.969e-13
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:  493 YISDKDLFAEFYRKKLARRL 552
            YI DKD+F++FY K  ++RL
Sbjct:  459 YIDDKDVFSKFYTKMFSKRL 478          
BLAST of EY675023 vs. ExPASy Swiss-Prot
Match: CUL3_DICDI (Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.227e-12
Identity = 44/153 (28.76%), Postives = 79/153 (51.63%), Query Frame = 3
Query:   15 LLENALSGCRALLREDKVQDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEK 473
            L++   SG  ++L++DK++DL RMY L+ ++  GL  + +V   ++   G  +V   E   T + G+          + +++L DKY   + N   N   F  ++++AFE F N       S E ++ F D  LKK G + +S+E ++  L+K
Sbjct:  271 LIDMENSGLISMLKDDKIEDLKRMYNLFSRVSDGLNLMKDVISSYVKEIGRGIVMDEE--KTKESGT--------YFQSLLDLKDKYDNLLQNALYNDKQFIHSIQQAFEYFINL---NPKSPEYISLFIDEKLKK-GLKGVSEEEVDIILDK 409          

HSP 2 Score: 25.7942 bits (55), Expect = 1.227e-12
Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  496 ISDKDLFAEFYRKKLARRL 552
            I +KD+F ++Y++ LA+RL
Sbjct:  417 IQEKDVFEKYYKQHLAKRL 435          
BLAST of EY675023 vs. ExPASy Swiss-Prot
Match: CUL4A_HUMAN (Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 2.070e-12
Identity = 41/146 (28.08%), Postives = 78/146 (53.42%), Query Frame = 3
Query:   36 GCRALLREDKVQDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEK 473
            G   LL E++V DL++MY+L+ ++  G + +   + ++I   GT +V   E             +++ +++ +++  DK    +  CF  +  F   +KE+FE F NK    +  +EL+A   D+ L + GN++ +DE +E TL+K
Sbjct:  306 GLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPE-------------KDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKR--PNKPAELIAKHVDSKL-RAGNKEATDEELERTLDK 435          

HSP 2 Score: 27.335 bits (59), Expect = 2.070e-12
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  493 YISDKDLFAEFYRKKLARRL 552
            +I  KD+F  FY+K LA+RL
Sbjct:  442 FIHGKDVFEAFYKKDLAKRL 461          
BLAST of EY675023 vs. ExPASy Swiss-Prot
Match: CUL4A_MOUSE (Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 5.882e-12
Identity = 41/146 (28.08%), Postives = 76/146 (52.05%), Query Frame = 3
Query:   36 GCRALLREDKVQDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEK 473
            G   LL E++V DL++MY+L+ ++  G   +   + ++I   GT +V   E             +++ +++ +++  DK    V  CF  +  F   +KE+FE F NK    +  +EL+A   D+ L + GN++ +DE +E  L+K
Sbjct:  306 GLEHLLDENRVPDLTQMYQLFSRVKGGQHALLQHWSEYIKTFGTTIVINPE-------------KDKDMVQDLLDFKDKVDHVVEVCFQRNERFINLMKESFETFINKR--PNKPAELIAKHVDSKL-RAGNKEATDEELERILDK 435          

HSP 2 Score: 27.335 bits (59), Expect = 5.882e-12
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  493 YISDKDLFAEFYRKKLARRL 552
            +I  KD+F  FY+K LA+RL
Sbjct:  442 FIHGKDVFEAFYKKDLAKRL 461          
The following BLAST results are available for this feature:
BLAST of EY675023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
CUL1_ARATH4.232e-6960.08Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1[more]
CUL1_DICDI9.360e-1835.92Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 ... [more]
CUL1_PONAB5.053e-1532.89Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1[more]
CUL1_MOUSE5.053e-1532.89Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1[more]
CUL1_HUMAN5.053e-1532.89Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2[more]
CUL4B_HUMAN1.105e-1428.77Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3[more]
CUL1_CAEEL1.969e-1330.46Cullin-1 OS=Caenorhabditis elegans GN=cul-1 PE=1 S... [more]
CUL3_DICDI1.227e-1228.76Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 ... [more]
CUL4A_HUMAN2.070e-1228.08Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3[more]
CUL4A_MOUSE5.882e-1228.08Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-004-H10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675023 ID=EY675023; Name=EY675023; organism=Citrus sinensis; type=EST; length=1024bp
CCACGCGTCCGGAGCTTCTTGAGAACGCGCTGTCTGGATGCCGAGCATTG
CTTAGAGAAGATAAGGTGCAGGATCTTTCTAGGATGTATAGGCTTTATCA
TAAAATACCTAAAGGCTTGGAGCCAGTGGCTAATGTATTCAAACAGCATA
TTACTGCCGAAGGTACTGTGTTGGTACAACAGGCTGAAGATGCTGCAACA
AACCAGGGTGGAAGTTCAGGTGCTGTGCAGGAACAGGTCCTTATCAGAAA
AATAATTGAGCTGCATGACAAGTATATGGAATACGTGACTAATTGTTTCA
TAAACCACACGTTGTTCCACAAGGCTCTGAAAGAGGCTTTTGAGATATTT
TGCAATAAAGCTGTTGGTGGCAGTTCGAGTTCAGAACTGCTGGCAACTTT
TTGTGATAATATCCTAAAGAAGGGTGGAAATGAGAAACTGAGTGATGAAG
CCATTGAAGAAACTCTGGAGAAAAGTTGTTAAGCTGCTTGCATATATCAG
TGATAAAGATCTTTTTGCCGAATTCTACAGGAAGAAGCTTGCTCGTCGGC
TTGCTTTTGATTCGTAATGCTAATGATGAATCATGAAAAGAGTATTTCTC
ACCAAACCTGAAACAACATTGTGGTGGAAAAGTTTAATCCAAAAAGGGAG
GGAAGGGTTACAAATTTTACTTTGGCAAAAAAAAAAATCAAAACCGCTTT
TGAGGAAAAATTCTCCACCATAAACCCAAAAAGGGCCCCCCCCCGGGAAA
AAAAATTTTTCATTTACTGGTTCCCCATACTGGGAATTTTTGCCCAAATT
TAAAAATCCCCTCAATCTCGAAACCTTTCCCTCTCAGAAAAGGGTAAAAG
TGGTGTAAAAATTTTTTTAGGGGGGATTTTTTTTAAAAACCACAAACAAA
AAAAAACCCAAAAAAATATTTTATTTGGGGGGTATTTTTTCTCCCTTGTG
GGGGGCTCTAATGTGCGACAATAAAAAAAGGGGGGTGGGGATGGTGTTTG
AAGAAAAAAAAAAAAAAAAAATAA
back to top