EY674784

Overview
NameEY674784
Unique NameEY674784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length996
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY674784_ssr169 microsatellite EY674784_ssr169:169..180. BLAST: Citrus ESTs to Prunus persica proteins V1
EY674784_ssr67 microsatellite EY674784_ssr67:67..82. BLAST: Citrus ESTs to Prunus persica proteins V1
EY674784_ssr272 microsatellite EY674784_ssr272:272..283. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY674784 vs. ExPASy Swiss-Prot
Match: STHY_ARATH (Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.475e-15
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  322 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGL-ANPSDVPRCDICENAPCF 504
            C+VCE+A A + C ADEAALC +CDEK+H  NKLA +H RV L A+ S +P+CDIC+ A  F
Sbjct:    5 CNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDICQEASGF 66          

HSP 2 Score: 23.0978 bits (48), Expect = 3.475e-15
Identity = 7/19 (36.84%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  503 FFYCEIDGSSLCLQCEMTV 559
            FF+C  D + LC +C++ +
Sbjct:   66 FFFCLQDRALLCRKCDVAI 84          
BLAST of EY674784 vs. ExPASy Swiss-Prot
Match: STO_ARATH (Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.076e-12
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 1
Query:  322 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPS-DVPRCDICENAPCFL 507
            CDVCE A A + C ADEAALC  CD ++H  NKLAS+H R+ L + S   PRCDIC+    F+
Sbjct:    5 CDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFI 67          
BLAST of EY674784 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 6.810e-12
Identity = 30/59 (50.85%), Postives = 35/59 (59.32%), Query Frame = 1
Query:  322 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAP 498
            CD C SAA  ++C AD A LC SCD +VH  N+LASRH RV +        C  CE AP
Sbjct:   12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV--------CQSCERAP 62          

HSP 2 Score: 28.4906 bits (62), Expect = 6.810e-12
Identity = 10/26 (38.46%), Postives = 16/26 (61.54%), Query Frame = 2
Query:  482 SVKMHPAFFYCEIDGSSLCLQCEMTV 559
            S +  PA F+C+ D +SLC  C+  +
Sbjct:   57 SCERAPAAFFCKADAASLCTTCDSEI 82          
BLAST of EY674784 vs. ExPASy Swiss-Prot
Match: STHX_ARATH (Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.890e-12
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1
Query:  322 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPS----DVPRCDICENAPCFL 507
            CDVC+   A +FC ADEA+LC  CD +VH  NKLAS+H+R  L  PS      P CDIC++    L
Sbjct:    5 CDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALL 70          
BLAST of EY674784 vs. ExPASy Swiss-Prot
Match: STH_ARATH (Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.346e-11
Identity = 35/63 (55.56%), Postives = 40/63 (63.49%), Query Frame = 1
Query:  322 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPS-DVPRCDICENAPCFL 507
            CDVCE A A L C ADEAALC  CD +VH  NKLAS+H R+ L + S   P CDIC     F+
Sbjct:    5 CDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDICLEKAAFI 67          
BLAST of EY674784 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.758e-11
Identity = 34/60 (56.67%), Postives = 38/60 (63.33%), Query Frame = 1
Query:  319 LCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAP 498
            LCD C+S AA LFC AD A LC  CD K+H  NKLASRH RV L        C++CE AP
Sbjct:    7 LCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL--------CEVCEQAP 58          
BLAST of EY674784 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.296e-11
Identity = 33/60 (55.00%), Postives = 38/60 (63.33%), Query Frame = 1
Query:  319 LCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAP 498
            LCD C+SA A L+C  D A LC SCD KVH  NKLASRH RV +        C++CE AP
Sbjct:    5 LCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWM--------CEVCEQAP 56          
The following BLAST results are available for this feature:
BLAST of EY674784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
STHY_ARATH3.475e-1558.06Probable salt tolerance-like protein At1g78600 OS=... [more]
STO_ARATH2.076e-1253.97Salt tolerance protein OS=Arabidopsis thaliana GN=... [more]
COL1_ARATH6.810e-1250.85Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
STHX_ARATH7.890e-1250.00Probable salt tolerance-like protein At1g75540 OS=... [more]
STH_ARATH1.346e-1155.56Salt tolerance-like protein OS=Arabidopsis thalian... [more]
COL3_ARATH1.758e-1156.67Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL4_ARATH2.296e-1155.00Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-001-D05-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674784 ID=EY674784; Name=EY674784; organism=Citrus sinensis; type=EST; length=996bp
CCACGCGTCCGAACACAACAGCACCCCCCATTCAACGCACAACAAACATA
TATTTTAAGCTCCAGTTTTCTTTCTTTCTTTCTTTTTTTTATAATACGTA
AAATTTGCTTTTAGGTTAGTTAACTCAATCGAGCTCTCTAATCTAATCTG
TTTCTGAACTTGTTGGATTCATCATCATCATCTTTGCATTAGTTTGGTTT
CGCCAGTGAAAAATACGATGTCGTTTCCGAGACAGAGATAGCTCGAATGA
AAAAGTAGAGAGATTAGAATAGATTGATTGATTGAACCAAAAGAAAAAGA
AACAGAAAAATGCGAACGCTTTGCGACGTGTGTGAAAGCGCAGCTGCGAT
TCTTTTCTGCGCTGCTGATGAGGCCGCTCTTTGCCGCTCTTGCGACGAAA
AGGTCCATATGTGCAATAAGCTTGCTAGTCGTCATGTGAGGGTAGGGCTT
GCTAACCCCAGTGATGTCCCACGCTGTGACATCTGTGAAAATGCACCCTG
CTTTCTTTTACTGTGAGATAGACGGTAGTTCCCTGTGCTTGCAATGCGAA
ATGACTGTTCTTGTTGGTGGGAAAAAAACCCATGGGAGATATCTCCTTTT
GAGGAGAAAGTTGAGGTTGGTGGCTCTCCTACTCGAAAGGGTTCGGGTTC
CTCCTTCGGTAAATGGCCTTCGAAAAAATTCTTCTTTGAAACCCCTTTAA
AATTTCCAGGGGAAAAGGGGGGGCCTTTGGGGGGAACGGGCTTTGAAATC
CCTTTGTTCAAAACAAAAAAACGAGGGGAAAAAACTCCACCTTTTTGGGT
ATTCCGGCTTGAAAAAAAAACCCACAAAAACCCAGGGGGGGCTCCCCACT
TTTCCAAAGGGCTTGTGGTGGGTATAGGGGGGAAGGGGGGGGAGGGAGAA
AAGGGGGGGGAAAAAAAAAAAATATTTATATTTTAGATTTTTCCAATGGG
GGGGAGGGGGCCCCCCAAACCGGGGGGGGGGGGGGAGAACAGCCCC
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