EY674777

Overview
NameEY674777
Unique NameEY674777
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1002
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY674777 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.379e-41
Identity = 52/89 (58.43%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:    7 VREMLGNPSNVSSAVRTSAPAPSNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPG 273
            V EMLG P N  +  R+SAP  S+PSTFK VALF                   ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV G
Sbjct:    6 VSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAG 91

HSP 2 Score: 77.0258 bits (188), Expect = 4.379e-41
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 2 
Query:  392 YGYDPFGLSMKPDDFSKYLAYEMIHDRWAMLGAAGFIIPEGLKK 523
            YGYDPFGL  KP++F+KY A+E+IH RWAMLGAAGFIIPE L K
Sbjct:   93 YGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNK 136

HSP 3 Score: 36.5798 bits (83), Expect = 4.379e-41
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = 3 
Query:  510 KALKKFGANCGPEADWFK 563
            +AL K+GANCGPEA WFK
Sbjct:  132 EALNKYGANCGPEAVWFK 149
The following BLAST results are available for this feature:
BLAST of EY674777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CB26_ARATH4.379e-4158.43Chlorophyll a-b binding protein CP26, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-001-C10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674777 ID=EY674777; Name=EY674777; organism=Citrus sinensis; type=EST; length=1002bp
CCACGCGTCCGGGAGATGCTTGGCAACCCTTCTAATGTCAGCAGTGCTGT
TAGGACTTCAGCTCCAGCCCCATCAAACCCTTCTACTTTCAAGCCCGTTG
CTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTC
GCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCG
AAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGT
ACTTGACCGGAGAAGTTCCCGGATAGTAGGATTGTCCTTCTTCTTCCCTT
CAGGGCCTCAGATGATTTTTCGTGAACATTGTTTAGTTGAATGTTTTTTA
AAACATTAATACATAATGAATTTTTGTTGCTTTATTGCAGCTATGGTTAC
GATCCTTTTGGTCTCAGCATGAAACCGGACGACTTCAGCAAATATCTGGC
ATATGAAATGATTCATGACAGATGGGCCATGCTTGGTGCTGCTGGTTTCA
TCATTCCTGAAGGCCTTAAAAAAGTTTGGTGCAAACTGTGGTCCTGAAGC
TGACTGGTTCAAGGTTAATTTTCATTTTTTCCAAAATCAGTGGTGCGTAA
TGGACGAGGGATTTGGTAAATGGTTTAGGTAATGGCCCGGGTTTTACCAG
AAGGGGAGTTCTTCCTGTTTGGTGGGGAAAATATTTGAAATTAATTACGG
AAAAGAAGATGCCCAGTTCTACGTTGGGTTTTTGCCTTCCCTTGTTGGAA
ATTTGGTCCTTGCGGGGGGGGTGGGGGAATATACTACAAAATAACACCCA
TAATGTTTTTGGTAAAATGGGAAAAAAAAAGACTATAACGCCGAGAAGGG
GGAGATATTTAAAAAAGCCCTGGGGGGTTAATAACATTAAGGATGTCAGT
GGTAGAGCTGATATTTGATAATGTGAGTGAAATAGGATGGAATAGAAAGA
ATATAATGAAGAAATACGGTAGATGAGTAAAGATAGATAACAATAGATTA
GT
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