EY674773

Overview
NameEY674773
Unique NameEY674773
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1019
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674773 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 3.982e-14
Identity = 30/82 (36.59%), Postives = 42/82 (51.22%), Query Frame = 1
Query:  139 VRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH 384
            V+++V LPLD VS  N                   V+GV + VWWG+ E +    Y+WS Y  + E+V+K GLKL   + FH
Sbjct:   10 VQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFH 91          

HSP 2 Score: 40.0466 bits (92), Expect = 3.982e-14
Identity = 25/93 (26.88%), Postives = 36/93 (38.71%), Query Frame = 3
Query:  390 ETAKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAGDDLPSSSGENSISSVPRIFARTLSLRSSLSGAQNYWDSQWG*DQRGELRIPFPP 668
            +   IP+P WV  +G     IFYTD  G +    L+L  D+ P   G +++                   A    D + G    GE+R P  P
Sbjct:   99 DAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGLGPAGEMRYPSYP 191          
BLAST of EY674773 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 3.982e-14
Identity = 30/82 (36.59%), Postives = 42/82 (51.22%), Query Frame = 1
Query:  139 VRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH 384
            V+++V LPLD VS  N                   V+GV + VWWG+ E +    Y+WS Y  + E+V+K GLKL   + FH
Sbjct:   10 VQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFH 91          

HSP 2 Score: 40.0466 bits (92), Expect = 3.982e-14
Identity = 25/93 (26.88%), Postives = 36/93 (38.71%), Query Frame = 3
Query:  390 ETAKIPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAGDDLPSSSGENSISSVPRIFARTLSLRSSLSGAQNYWDSQWG*DQRGELRIPFPP 668
            +   IP+P WV  +G     IFYTD  G +    L+L  D+ P   G +++                   A    D + G    GE+R P  P
Sbjct:   99 DAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEVGLGPAGEMRYPSYP 191          
BLAST of EY674773 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 53.5286 bits (127), Expect = 2.490e-13
Identity = 26/82 (31.71%), Postives = 40/82 (48.78%), Query Frame = 1
Query:  139 VRLFVGLPLDTVSDANTVNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH 384
            V L+V LPL  V+  N                    +GV + VWWG+ E +   +Y+WS Y  + ++V+K GLK+   + FH
Sbjct:   14 VSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKKCGLKIQAIMSFH 95          

HSP 2 Score: 43.5134 bits (101), Expect = 2.490e-13
Identity = 26/89 (29.21%), Postives = 40/89 (44.94%), Query Frame = 3
Query:  402 IPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAGDDLPSSSGENSISSVPRIFARTLSLRSSLSGAQNYWDSQWG*DQRGELRIPFPP 668
            IP+P W+ QIG+    IFYT+++G + +  LSL  D+     G  ++              +    A +  D + G    GELR P  P
Sbjct:  107 IPIPQWILQIGDKNPDIFYTNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGCGAAGELRYPSYP 195          
BLAST of EY674773 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 3.234e-13
Identity = 24/86 (27.91%), Postives = 44/86 (51.16%), Query Frame = 1
Query:  130 LDAVRLFVGLPLDTVSDANT-VNHXXXXXXXXXXXXXXXVEGVELPVWWGVAEKEAMGKYNWSGYLAVAEMVEKIGLKLHVSLCFH 384
            L+ V ++V LPL  V+  N   +                V+GV + VWWG+ E +   +Y+W+ Y  + +++ ++GLK+   + FH
Sbjct:   11 LNYVPVYVMLPLGVVNVENVFADPETLETQLKRLKEEAGVDGVMVDVWWGIIESKGPKQYDWTAYKTLFQLIARLGLKIQAIMSFH 96          

HSP 2 Score: 46.595 bits (109), Expect = 3.234e-13
Identity = 36/142 (25.35%), Postives = 56/142 (39.44%), Query Frame = 3
Query:  402 IPLPDWVSQIGESQSSIFYTDQSGQQFKGCLSLAGDDLPSSSGENSISSVPRIFARTLSLRSSLSGAQNYWDSQWG*DQRGELRIPFPPPRITQIYQNPRELGKIPVFVNKKHGLTFFPETRPKNQGENPFWGEPPWGPPSD 827
            IP+P WV  +G++   I+YT++ G +    LS+  D+LP  +G  ++       +      + L  A    D + G    GELR P  P     ++    E      ++ K      F E   K        G P W  P D
Sbjct:  108 IPIPQWVRDVGDNDPDIYYTNRKGTRDIEYLSIGVDNLPLFAGRTAVQLYSDYMSSFKENMADLIEAGVIVDIEVGLGPAGELRYPSYPQSQGWVFPGIGEFQCYDKYLKKD-----FKEAAAKA-------GHPEWDLPED 237          
The following BLAST results are available for this feature:
BLAST of EY674773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AMYB_HORVU3.982e-1436.59Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_HORSP3.982e-1436.59Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_IPOBA2.490e-1331.71Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]
AMYB_ARATH3.234e-1327.91Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-001-C06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674773 ID=EY674773; Name=EY674773; organism=Citrus sinensis; type=EST; length=1019bp
CCACGCGTCCGCCGAAGTGCAAATCTGCCCCTATCTCAGCTTCGATTTTG
CACCAAAGCTTCTGTTCACCCTCAACCTCTCCCATCCGACAGAGATTCGG
GTCCTTTATCTTCTGCCAGACCCAAATCGCTTGATGCTGTAAGATTATTC
GTTGGGCTTCCCTTGGATACAGTTTCTGATGCCAATACAGTGAACCATGC
AAAAGCTATTGCAGCTGGACTTAAAGCTTTGAAGCTGTTGGGAGTGGAAG
GCGTTGAGCTACCAGTTTGGTGGGGAGTAGCAGAGAAGGAAGCCATGGGA
AAGTACAATTGGTCTGGCTACCTTGCTGTTGCAGAGATGGTTGAAAAAAT
AGGTCTCAAGCTTCATGTGTCACTCTGCTTCCATGCTTTGAAACAGCCAA
AATTCCACTCCCCGATTGGGTCTCCCAAATTGGTGAGTCCCAATCAAGCA
TCTTTTACACAGATCAGTCAGGGCAGCAATTCAAAGGTTGCCTATCATTG
GCTGGTGATGATCTTCCCAGTTCTTCAGGGGAAAACTCCATTTCCAGTGT
ACCAAGAATTTTTGCGAGAACTTTAAGTCTTCGTTCAAGCCTTTCTGGGG
CCCAAAATTACTGGGATTCTCAATGGGGCTAGGACCAAAGGGGGGAACTT
CGGATTCCCTTCCCCCCCCCCCGAATAACCCAAATTTACCAAAATCCCCG
GGAGTTGGGAAAAATTCCAGTGTTTGTGAACAAAAAACATGGCTTAACCT
TCTTTCCGGAAACTAGGCCCAAAAATCAAGGGGAAAATCCCTTTTGGGGG
GAACCTCCGTGGGGGCCCCCCAGTGATCGCCCCCCAGTTTATAGAACGGA
GGTCACCCCAAACCCTAAAACACGATTTTTCTTTTTAAGGAGAAAAATGG
GGGGGGTTCCCCCAGGGGGGAAACTCCCCCCCATACCGGGGGGAAAACCT
TTTTTCTTCCTCTTTTCTCACCGTGGACAAACCCACACAAGAAGCTCACA
TGTTAAATAATATATTATC
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