EY674161
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY674161 vs. ExPASy Swiss-Prot
Match: LPXB_GRABC (Lipid-A-disaccharide synthase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=lpxB PE=3 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 5.218e-18 Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 1 Query: 94 PRVRSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLR 300 PR+ E G +SLFPM ++AVMG+ E+LP + K R RL++T++ RP V+T+DS GF RLL+ ++ Sbjct: 41 PRME-ECGFQSLFPMHELAVMGLIEILPRVLKLRRRLQQTVQDIETRRPDLVLTIDSPGFCLRLLRAIQ 108 HSP 2 Score: 40.0466 bits (92), Expect = 5.218e-18 Identity = 35/116 (30.17%), Postives = 49/116 (42.24%), Query Frame = 3 Query: 435 LWIRILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEEFQK*IFSTFRSHDH*LAPRKQI----TGGRSN-ASHLCKDYGTTKRLLFPELITVIHVGP 767 LW R+LC+LP EE + FVGHPV+E + +G++ F+ H LA ++ G R+N A L YG T RLL + T+ V P Sbjct: 136 LWERMLCLLPFEEKWFAERNVPGQFVGHPVLESGAD--------------QGDAARFRA---------RHSLADNARVIVLMPGSRANEAGRLLPVYGETLRLLMQNIPTITPVIP 228 HSP 3 Score: 27.335 bits (59), Expect = 5.218e-18 Identity = 12/23 (52.17%), Postives = 14/23 (60.87%), Query Frame = 2 Query: 353 GPAHFHYVAPSFWAWKGGEARLK 421 G HYVAP WAW+ E R+K Sbjct: 111 GIKRVHYVAPQVWAWR--EHRVK 131
BLAST of EY674161 vs. ExPASy Swiss-Prot
Match: LPXB_MAGSA (Lipid-A-disaccharide synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=lpxB PE=3 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 1.947e-17 Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 1 Query: 112 QGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRGQ 306 +G+ SLFPM +++VMG+ E+LP I K R+K+TI RP A+VT+DS GF+ R+ L+ + Sbjct: 44 EGLTSLFPMTELSVMGLVEVLPRIPKILRRVKQTISDIETKRPDALVTIDSWGFNGRIQAGLKAR 108 HSP 2 Score: 33.113 bits (74), Expect = 1.947e-17 Identity = 15/25 (60.00%), Postives = 16/25 (64.00%), Query Frame = 2 Query: 368 HYVAPSFWAWKGGEARLKNLAAFVD 442 HYVAP WAWK G R K LA +D Sbjct: 116 HYVAPMVWAWKSG--RTKTLARVLD 138 HSP 3 Score: 30.0314 bits (66), Expect = 1.947e-17 Identity = 21/80 (26.25%), Postives = 39/80 (48.75%), Query Frame = 1 Query: 604 FKNKYSVPSGAMIISLLPGSRLQEVARMLPIFAKTMELLKDSFSRS**QSFMWDLIGIVKILHLDLLEMARAFYIESWKM 843 F+ ++ ++ +LPGSR E A++L F +T+ LL F DL +V + E+++A ++SW + Sbjct: 178 FRVRHGFAPDRKLLCVLPGSRHSETAKLLAPFGETIALLARRFP---------DLAVVVPTVETVADEVSQA--VKSWAL 246 HSP 4 Score: 29.261 bits (64), Expect = 1.947e-17 Identity = 13/28 (46.43%), Postives = 16/28 (57.14%), Query Frame = 3 Query: 447 ILCILPNEEAICRLNGLAATFVGHPVVE 530 +L +LPNE GL VGHPV+E Sbjct: 140 LLTLLPNEPEWFEKEGLKTLHVGHPVIE 167
BLAST of EY674161 vs. ExPASy Swiss-Prot
Match: LPXB_ANADE (Lipid-A-disaccharide synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=lpxB PE=3 SV=1) HSP 1 Score: 47.7506 bits (112), Expect = 1.147e-15 Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 1 Query: 94 PRVRSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLR 300 PR+R E G+++L P EDI+VMG+ E+LP I + L+ AA RP A + VD F+ RL +L+ Sbjct: 46 PRLR-EAGLEALAPAEDISVMGLAEVLPRIPRILGILRMLGRAAAERRPKAALLVDLPDFNLRLAARLK 113 HSP 2 Score: 35.4242 bits (80), Expect = 1.147e-15 Identity = 16/29 (55.17%), Postives = 19/29 (65.52%), Query Frame = 3 Query: 444 RILCILPNEEAICRLNGLAATFVGHPVVE 530 R+LCILP EE G++A FVGHP E Sbjct: 144 RMLCILPFEERFYEGTGVSARFVGHPFAE 172 HSP 3 Score: 31.187 bits (69), Expect = 1.147e-15 Identity = 13/44 (29.55%), Postives = 27/44 (61.36%), Query Frame = 1 Query: 592 TLKNFKNKYSVPSGAMIISLLPGSRLQEVARMLPIFAKTMELLK 723 T +++++ +P+ I+++PGSR E+ R+LP + E L+ Sbjct: 178 TPESYRSALGLPAARTTIAMVPGSRPSELKRLLPPMLEAAERLR 221 HSP 4 Score: 29.261 bits (64), Expect = 1.147e-15 Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 2 Query: 368 HYVAPSFWAWKGGEARLKNLAAFVD 442 +YV+P+ WAW+ G R K +A VD Sbjct: 121 YYVSPTIWAWRQG--RAKQIARVVD 143
BLAST of EY674161 vs. ExPASy Swiss-Prot
Match: LPXB_ANASK (Lipid-A-disaccharide synthase OS=Anaeromyxobacter sp. (strain K) GN=lpxB PE=3 SV=1) HSP 1 Score: 48.1358 bits (113), Expect = 2.459e-15 Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 1 Query: 94 PRVRSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLR 300 PR+R E G+++L P EDI+VMG+ E+LP I + L+ AA RP A + VD F+ RL +L+ Sbjct: 46 PRLR-EAGLEALAPAEDISVMGLAEVLPRIPRILGILRMLGRAAAERRPRAALLVDLPDFNLRLAARLK 113 HSP 2 Score: 35.4242 bits (80), Expect = 2.459e-15 Identity = 16/29 (55.17%), Postives = 19/29 (65.52%), Query Frame = 3 Query: 444 RILCILPNEEAICRLNGLAATFVGHPVVE 530 R+LCILP EE G++A FVGHP E Sbjct: 144 RMLCILPFEERFYEGTGVSARFVGHPFAE 172 HSP 3 Score: 29.6462 bits (65), Expect = 2.459e-15 Identity = 12/40 (30.00%), Postives = 24/40 (60.00%), Query Frame = 1 Query: 604 FKNKYSVPSGAMIISLLPGSRLQEVARMLPIFAKTMELLK 723 +++ +P+ I+++PGSR E+ R+LP + E L+ Sbjct: 182 YRSALGLPASRTTIAMVPGSRPSELKRLLPPMLQAAERLR 221 HSP 4 Score: 29.261 bits (64), Expect = 2.459e-15 Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 2 Query: 368 HYVAPSFWAWKGGEARLKNLAAFVD 442 +YV+P+ WAW+ G R K +A VD Sbjct: 121 YYVSPTIWAWRQG--RAKKIARVVD 143
BLAST of EY674161 vs. ExPASy Swiss-Prot
Match: LPXB_ANAD2 (Lipid-A-disaccharide synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=lpxB PE=3 SV=1) HSP 1 Score: 48.1358 bits (113), Expect = 2.459e-15 Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 1 Query: 94 PRVRSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLR 300 PR+R E G+++L P EDI+VMG+ E+LP I + L+ AA RP A + VD F+ RL +L+ Sbjct: 46 PRLR-EAGLEALAPAEDISVMGLAEVLPRIPRILGILRMLGRAAAERRPRAALLVDLPDFNLRLAARLK 113 HSP 2 Score: 35.4242 bits (80), Expect = 2.459e-15 Identity = 16/29 (55.17%), Postives = 19/29 (65.52%), Query Frame = 3 Query: 444 RILCILPNEEAICRLNGLAATFVGHPVVE 530 R+LCILP EE G++A FVGHP E Sbjct: 144 RMLCILPFEERFYEGTGVSARFVGHPFAE 172 HSP 3 Score: 29.6462 bits (65), Expect = 2.459e-15 Identity = 12/40 (30.00%), Postives = 24/40 (60.00%), Query Frame = 1 Query: 604 FKNKYSVPSGAMIISLLPGSRLQEVARMLPIFAKTMELLK 723 +++ +P+ I+++PGSR E+ R+LP + E L+ Sbjct: 182 YRSALGLPASRTTIAMVPGSRPSELKRLLPPMLQAAERLR 221 HSP 4 Score: 29.261 bits (64), Expect = 2.459e-15 Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 2 Query: 368 HYVAPSFWAWKGGEARLKNLAAFVD 442 +YV+P+ WAW+ G R K +A VD Sbjct: 121 YYVSPTIWAWRQG--RAKKIARVVD 143
BLAST of EY674161 vs. ExPASy Swiss-Prot
Match: LPXB_MYXXD (Lipid-A-disaccharide synthase OS=Myxococcus xanthus (strain DK 1622) GN=lpxB PE=3 SV=1) HSP 1 Score: 46.595 bits (109), Expect = 1.128e-14 Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 1 Query: 112 QGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLR 300 QG++ LF +++VMGI E+LP I + LK EAA +P + VD F+ RL K+L+ Sbjct: 47 QGVELLFDAREVSVMGITEVLPRIPRILQILKGLAEAAAERKPDVAILVDIPDFNLRLAKKLK 109 HSP 2 Score: 35.4242 bits (80), Expect = 1.128e-14 Identity = 17/29 (58.62%), Postives = 21/29 (72.41%), Query Frame = 3 Query: 444 RILCILPNEEAICRLNGLAATFVGHPVVE 530 R+LCILP EE R G++A +VG PVVE Sbjct: 140 RMLCILPFEEDFYREAGVSARYVGSPVVE 168 HSP 3 Score: 31.5722 bits (70), Expect = 1.128e-14 Identity = 13/35 (37.14%), Postives = 22/35 (62.86%), Query Frame = 1 Query: 589 ETLKNFKNKYSVPSGAMIISLLPGSRLQEVARMLP 693 +T F+ + + A ++LLPGSR+ E+ R+LP Sbjct: 174 DTATAFRERLGLSKDAPTLALLPGSRMGEIRRLLP 208 HSP 4 Score: 26.5646 bits (57), Expect = 1.128e-14 Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 2 Query: 368 HYVAPSFWAWKGGEAR 415 +YV+P WAW+ G R Sbjct: 117 YYVSPMIWAWRRGRVR 132
BLAST of EY674161 vs. ExPASy Swiss-Prot
Match: LPXB_SILPO (Lipid-A-disaccharide synthase OS=Silicibacter pomeroyi GN=lpxB PE=3 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.204e-14 Identity = 27/72 (37.50%), Postives = 46/72 (63.89%), Query Frame = 1 Query: 94 PRVRSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLRGQS 309 P + SE G+ S FPM ++++MG+ E+LP + + R+ ET +A L RP ++T+DS FS R+ + ++ S Sbjct: 54 PAMESE-GLSSRFPMAELSIMGLVEVLPKYFHLKRRIAETAQAVLAMRPDVMITIDSPDFSLRVARLVKDAS 124 HSP 2 Score: 31.187 bits (69), Expect = 1.204e-14 Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 2 Query: 368 HYVAPSFWAWKGGEA 412 HYVAPS WAW+ G A Sbjct: 130 HYVAPSVWAWRPGRA 144 HSP 3 Score: 31.187 bits (69), Expect = 1.204e-14 Identity = 19/58 (32.76%), Postives = 25/58 (43.10%), Query Frame = 3 Query: 447 ILCILPNEEAICRLNGLAATFVGHPVVED---------CLELNLGKGPEPCELKMEGN 593 +L +LP E G+ FVGHPVV + L LG G P L + G+ Sbjct: 154 VLALLPFEPPYMERAGMECDFVGHPVVTEPEATGADIAALRTELGLGAAPVLLALPGS 211
BLAST of EY674161 vs. ExPASy Swiss-Prot
Match: LPXB_RHOCS (Lipid-A-disaccharide synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=lpxB PE=3 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 4.705e-14 Identity = 33/69 (47.83%), Postives = 49/69 (71.01%), Query Frame = 1 Query: 94 PRVRSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEAALLFRPHAVVTVDSKGFSFRLLKQLR 300 PR+ +EQG++SLFPMED+A+ G+ ELLP + RL +T +A L P AVV++D+ F FR+ ++LR Sbjct: 42 PRM-AEQGLQSLFPMEDLALFGLAELLPRLPTLLKRLDQTTKAVLERTPDAVVSIDAPDFCFRVEQRLR 109 HSP 2 Score: 36.1946 bits (82), Expect = 4.705e-14 Identity = 54/212 (25.47%), Postives = 75/212 (35.38%), Query Frame = 2 Query: 368 HYVAPSFWAWKGGEARLKNLAAFVDPHLVHTSK*GSHL*IEWTGCNFCGPPCCGRLFGVEFGEGT*TM*IEDGRKL*RISKINIQYLQEP*SLACSPEADYRRSLECFPSLQRLWNY*KTPFPGVDNSHSCGT*SGL*KYFTWTYWKWPVPSILSPGRCSNPKYDGFQANRGGFLNFRNIAWELHFAQYLEVWAFK-----QLSYVRGIRIK 988 HYVAP+ WAW+ G AR +A F+D L + C F G P VE G DG + R I + L P + + P + +P D T G+ + WPVP+I G KYD F A+ +A EL A+ V A++ Y R IR++ Sbjct: 119 HYVAPTVWAWRPGRAR--KVAKFLDHLLALLPFEPPYFEAVGLPCTFVGHPV------VESGADA-----GDGERFRRRHGI----APDATVLTVLPGSRRSEVTKLLPDFGATLEILASRYP--DLQVVVPTVPGVAETVAEAVQSWPVPAITLLGDAD--KYDAFAASTAALAASGTVALELALARVPAVIAYRIHPVSHALYRRFIRVR 309
BLAST of EY674161 vs. ExPASy Swiss-Prot
Match: LPXB_BURPS (Lipid-A-disaccharide synthase OS=Burkholderia pseudomallei GN=lpxB PE=3 SV=1) HSP 1 Score: 35.8094 bits (81), Expect = 2.359e-13 Identity = 23/59 (38.98%), Postives = 35/59 (59.32%), Query Frame = 1 Query: 130 FPMEDIAVMGIWELLPHIYKFRVRLKETIEAALLFRP-HAVVTVDSKGFSFRLLKQLRG 303 +PME +AV G E L HI + +R++ ++ LL P A V +D+ F+F L + LRG Sbjct: 57 WPMEKLAVRGYVEALKHIPEI-LRIRGELKRQLLAEPPDAFVGIDAPDFNFGLEQALRG 114 HSP 2 Score: 33.8834 bits (76), Expect = 2.359e-13 Identity = 13/29 (44.83%), Postives = 20/29 (68.97%), Query Frame = 3 Query: 447 ILCILPNEEAICRLNGLAATFVGHPVVED 533 +LC+ P E + G+AATFVGHP+ ++ Sbjct: 145 MLCLFPFEPELLEKAGVAATFVGHPLADE 173 HSP 3 Score: 33.113 bits (74), Expect = 2.359e-13 Identity = 13/25 (52.00%), Postives = 17/25 (68.00%), Query Frame = 2 Query: 368 HYVAPSFWAWKGGEARLKNLAAFVD 442 H+V PS WAW+GG R+K + VD Sbjct: 121 HFVCPSIWAWRGG--RIKKIVKAVD 143 HSP 4 Score: 32.7278 bits (73), Expect = 2.359e-13 Identity = 14/34 (41.18%), Postives = 22/34 (64.71%), Query Frame = 1 Query: 622 VPSGAMIISLLPGSRLQEVARMLPIFAKTMELLK 723 +P G +I++LPGSR E+ + P F MEL++ Sbjct: 189 LPDGGPVIAVLPGSRRSEIELIGPTFFDAMELMQ 222
BLAST of EY674161 vs. ExPASy Swiss-Prot
Match: LPXB_BURP6 (Lipid-A-disaccharide synthase OS=Burkholderia pseudomallei (strain 668) GN=lpxB PE=3 SV=1) HSP 1 Score: 35.8094 bits (81), Expect = 2.359e-13 Identity = 23/59 (38.98%), Postives = 35/59 (59.32%), Query Frame = 1 Query: 130 FPMEDIAVMGIWELLPHIYKFRVRLKETIEAALLFRP-HAVVTVDSKGFSFRLLKQLRG 303 +PME +AV G E L HI + +R++ ++ LL P A V +D+ F+F L + LRG Sbjct: 57 WPMEKLAVRGYVEALKHIPEI-LRIRGELKRQLLAEPPDAFVGIDAPDFNFGLEQALRG 114 HSP 2 Score: 33.8834 bits (76), Expect = 2.359e-13 Identity = 13/29 (44.83%), Postives = 20/29 (68.97%), Query Frame = 3 Query: 447 ILCILPNEEAICRLNGLAATFVGHPVVED 533 +LC+ P E + G+AATFVGHP+ ++ Sbjct: 145 MLCLFPFEPELLEKAGVAATFVGHPLADE 173 HSP 3 Score: 33.113 bits (74), Expect = 2.359e-13 Identity = 13/25 (52.00%), Postives = 17/25 (68.00%), Query Frame = 2 Query: 368 HYVAPSFWAWKGGEARLKNLAAFVD 442 H+V PS WAW+GG R+K + VD Sbjct: 121 HFVCPSIWAWRGG--RIKKIVKAVD 143 HSP 4 Score: 32.7278 bits (73), Expect = 2.359e-13 Identity = 14/34 (41.18%), Postives = 22/34 (64.71%), Query Frame = 1 Query: 622 VPSGAMIISLLPGSRLQEVARMLPIFAKTMELLK 723 +P G +I++LPGSR E+ + P F MEL++ Sbjct: 189 LPGGGPVIAVLPGSRRSEIELIGPTFFDAMELMQ 222 The following BLAST results are available for this feature:
BLAST of EY674161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
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Sequences
The
following sequences are available for this feature:
EST sequence >EY674161 ID=EY674161; Name=EY674161; organism=Citrus sinensis; type=EST; length=1029bpback to top |