EY674157
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY674157 vs. ExPASy Swiss-Prot
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 3.677e-75 Identity = 114/169 (67.46%), Postives = 140/169 (82.84%), Query Frame = 2 Query: 149 MATLAH-LFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVQEAGILPGLKEEFAIIGENEADDSLALS 652 MA+LA L GLRCPP+S++ LS+ S K + IVSAVA+SNA+TRER++L QLFE+AYERCR APMEGVSFT+++FH+AL+KYDFNSE+G++VKGTVFCTD GALVDITAKSSAYLP EACI++IK+V+EAGI+PG++EEF IIGENEADDSL LS Sbjct: 1 MASLAQQLAGGLRCPPLSNSNLSKPFS-----PKHTLKPRFSPIVSAVAVSNAQTRERQKLKQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDITAKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILS 164 HSP 2 Score: 81.6481 bits (200), Expect = 3.677e-75 Identity = 57/120 (47.50%), Postives = 66/120 (55.00%), Query Frame = 3 Query: 651 ALRMIHYQLAWDRCRQLQSDDVGAKGKVAGANKRGVVPEVEGLSGFVPFSPIHPNP-----LQKTSP----ERPPSQACGG**RTVYALPK*PHGMADSQPHLAIASRPLVLNTSLKPLG 983 +LR I Y+LAW+RCRQLQ++DV KGK+ GANK GVV VEGL GFVPFS I L+K P E Q+ R V + K MADSQ L I S SLKP G Sbjct: 164 SLRQIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEVDEEQS-----RLVMSNRK---AMADSQAQLGIGSVVTGTVQSLKPYG 275
BLAST of EY674157 vs. ExPASy Swiss-Prot
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803) GN=rps1A PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 8.375e-22 Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 2 Query: 383 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVQEAGILPGLKEEFAIIGENEADDSLALS 652 + FTLE+F + L+KYD++ G V GTVF ++RGAL+DI AK++AY+P QE I+++ +E + P EF I+ + D L LS Sbjct: 10 IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVDDPEEV-LQPNETREFFILTDENEDGQLTLS 98 HSP 2 Score: 50.8322 bits (120), Expect = 8.375e-22 Identity = 22/52 (42.31%), Postives = 32/52 (61.54%), Query Frame = 3 Query: 651 ALRMIHYQLAWDRCRQLQSDDVGAKGKVAGANKRGVVPEVEGLSGFVPFSPI 806 ++R I Y AW+R RQLQ++D + V N+ G + +EGL GF+P S I Sbjct: 98 SIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHI 149
BLAST of EY674157 vs. ExPASy Swiss-Prot
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4) HSP 1 Score: 71.2478 bits (173), Expect = 6.881e-21 Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 2 Query: 371 PMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVQEAGILPGLKEEFAIIGENEADDSLALS 652 P + FT E+F + L++YD++ G V GTVF + RGAL+DI AK++A+LP QE I++++ +E + P EF I+ + D L LS Sbjct: 7 PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSINRVESPEEV-LQPSEMREFFILSDENEDGQLTLS 99 HSP 2 Score: 51.2174 bits (121), Expect = 6.881e-21 Identity = 22/52 (42.31%), Postives = 33/52 (63.46%), Query Frame = 3 Query: 651 ALRMIHYQLAWDRCRQLQSDDVGAKGKVAGANKRGVVPEVEGLSGFVPFSPI 806 ++R I Y AW+R RQLQ++D + +V N+ G + +EGL GF+P S I Sbjct: 99 SIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHI 150
BLAST of EY674157 vs. ExPASy Swiss-Prot
Match: RR1_PORPU (30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea GN=rps1 PE=3 SV=1) HSP 1 Score: 48.9062 bits (115), Expect = 8.474e-13 Identity = 25/52 (48.08%), Postives = 31/52 (59.62%), Query Frame = 2 Query: 386 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE 541 SFT F + L+KY ++ LG V GT+F + G LVDI SAYLP QE Sbjct: 7 SFTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPVSAYLPIQE 58 HSP 2 Score: 46.2098 bits (108), Expect = 8.474e-13 Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 3 Query: 651 ALRMIHYQLAWDRCRQLQSDDVGAKGKVAGANKRGVVPEVEGLSGFVPFSPIHPNPLQKTS 833 ++R + Y AW R RQL ++D ++ G NK G++ +EG+SGFVP S H N K + Sbjct: 94 SIRRLEYIRAWKRIRQLLAEDSLLDVRIKGFNKGGMIVNLEGISGFVPNS--HLNNFSKNT 152
BLAST of EY674157 vs. ExPASy Swiss-Prot
Match: RR1_PORYE (30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis GN=rps1 PE=3 SV=2) HSP 1 Score: 47.3654 bits (111), Expect = 2.411e-12 Identity = 24/51 (47.06%), Postives = 30/51 (58.82%), Query Frame = 2 Query: 389 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE 541 FT F + L+KY ++ LG V GT+F + G LVDI SAYLP QE Sbjct: 8 FTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPISAYLPIQE 58 HSP 2 Score: 46.2098 bits (108), Expect = 2.411e-12 Identity = 32/94 (34.04%), Postives = 49/94 (52.13%), Query Frame = 3 Query: 549 FTRLNMYKRQVYFRG*RRSLQLLVKMKLMIAWP*ALRMIHYQLAWDRCRQLQSDDVGAKGKVAGANKRGVVPEVEGLSGFVPFSPIHPNPLQKT 830 FT LN+ + +F L ++ K +I ++R + Y AW R RQL ++D + G NK G++ +EG+SGFVP S H QK+ Sbjct: 68 FTSLNINDTREFFL-----LDYNIQSKQLIL---SIRRLEYIRAWKRIRQLLAEDSLLNVMIKGFNKGGMIINLEGISGFVPNS--HLGNFQKS 151 The following BLAST results are available for this feature:
BLAST of EY674157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY674157 ID=EY674157; Name=EY674157; organism=Citrus sinensis; type=EST; length=992bpback to top |