EY674157

Overview
NameEY674157
Unique NameEY674157
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length992
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674157 vs. ExPASy Swiss-Prot
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 3.677e-75
Identity = 114/169 (67.46%), Postives = 140/169 (82.84%), Query Frame = 2
Query:  149 MATLAH-LFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVQEAGILPGLKEEFAIIGENEADDSLALS 652
            MA+LA  L  GLRCPP+S++ LS+  S      K     +   IVSAVA+SNA+TRER++L QLFE+AYERCR APMEGVSFT+++FH+AL+KYDFNSE+G++VKGTVFCTD  GALVDITAKSSAYLP  EACI++IK+V+EAGI+PG++EEF IIGENEADDSL LS
Sbjct:    1 MASLAQQLAGGLRCPPLSNSNLSKPFS-----PKHTLKPRFSPIVSAVAVSNAQTRERQKLKQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDITAKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILS 164          

HSP 2 Score: 81.6481 bits (200), Expect = 3.677e-75
Identity = 57/120 (47.50%), Postives = 66/120 (55.00%), Query Frame = 3
Query:  651 ALRMIHYQLAWDRCRQLQSDDVGAKGKVAGANKRGVVPEVEGLSGFVPFSPIHPNP-----LQKTSP----ERPPSQACGG**RTVYALPK*PHGMADSQPHLAIASRPLVLNTSLKPLG 983
            +LR I Y+LAW+RCRQLQ++DV  KGK+ GANK GVV  VEGL GFVPFS I         L+K  P    E    Q+     R V +  K    MADSQ  L I S       SLKP G
Sbjct:  164 SLRQIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEVDEEQS-----RLVMSNRK---AMADSQAQLGIGSVVTGTVQSLKPYG 275          
BLAST of EY674157 vs. ExPASy Swiss-Prot
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803) GN=rps1A PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.375e-22
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  383 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVQEAGILPGLKEEFAIIGENEADDSLALS 652
            + FTLE+F + L+KYD++   G  V GTVF  ++RGAL+DI AK++AY+P QE  I+++   +E  + P    EF I+ +   D  L LS
Sbjct:   10 IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVDDPEEV-LQPNETREFFILTDENEDGQLTLS 98          

HSP 2 Score: 50.8322 bits (120), Expect = 8.375e-22
Identity = 22/52 (42.31%), Postives = 32/52 (61.54%), Query Frame = 3
Query:  651 ALRMIHYQLAWDRCRQLQSDDVGAKGKVAGANKRGVVPEVEGLSGFVPFSPI 806
            ++R I Y  AW+R RQLQ++D   +  V   N+ G +  +EGL GF+P S I
Sbjct:   98 SIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHI 149          
BLAST of EY674157 vs. ExPASy Swiss-Prot
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 6.881e-21
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  371 PMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVQEAGILPGLKEEFAIIGENEADDSLALS 652
            P   + FT E+F + L++YD++   G  V GTVF  + RGAL+DI AK++A+LP QE  I++++  +E  + P    EF I+ +   D  L LS
Sbjct:    7 PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSINRVESPEEV-LQPSEMREFFILSDENEDGQLTLS 99          

HSP 2 Score: 51.2174 bits (121), Expect = 6.881e-21
Identity = 22/52 (42.31%), Postives = 33/52 (63.46%), Query Frame = 3
Query:  651 ALRMIHYQLAWDRCRQLQSDDVGAKGKVAGANKRGVVPEVEGLSGFVPFSPI 806
            ++R I Y  AW+R RQLQ++D   + +V   N+ G +  +EGL GF+P S I
Sbjct:   99 SIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHI 150          
BLAST of EY674157 vs. ExPASy Swiss-Prot
Match: RR1_PORPU (30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea GN=rps1 PE=3 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 8.474e-13
Identity = 25/52 (48.08%), Postives = 31/52 (59.62%), Query Frame = 2
Query:  386 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE 541
            SFT   F + L+KY ++  LG  V GT+F  +  G LVDI    SAYLP QE
Sbjct:    7 SFTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPVSAYLPIQE 58          

HSP 2 Score: 46.2098 bits (108), Expect = 8.474e-13
Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 3
Query:  651 ALRMIHYQLAWDRCRQLQSDDVGAKGKVAGANKRGVVPEVEGLSGFVPFSPIHPNPLQKTS 833
            ++R + Y  AW R RQL ++D     ++ G NK G++  +EG+SGFVP S  H N   K +
Sbjct:   94 SIRRLEYIRAWKRIRQLLAEDSLLDVRIKGFNKGGMIVNLEGISGFVPNS--HLNNFSKNT 152          
BLAST of EY674157 vs. ExPASy Swiss-Prot
Match: RR1_PORYE (30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis GN=rps1 PE=3 SV=2)

HSP 1 Score: 47.3654 bits (111), Expect = 2.411e-12
Identity = 24/51 (47.06%), Postives = 30/51 (58.82%), Query Frame = 2
Query:  389 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE 541
            FT   F + L+KY ++  LG  V GT+F  +  G LVDI    SAYLP QE
Sbjct:    8 FTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPISAYLPIQE 58          

HSP 2 Score: 46.2098 bits (108), Expect = 2.411e-12
Identity = 32/94 (34.04%), Postives = 49/94 (52.13%), Query Frame = 3
Query:  549 FTRLNMYKRQVYFRG*RRSLQLLVKMKLMIAWP*ALRMIHYQLAWDRCRQLQSDDVGAKGKVAGANKRGVVPEVEGLSGFVPFSPIHPNPLQKT 830
            FT LN+   + +F      L   ++ K +I    ++R + Y  AW R RQL ++D      + G NK G++  +EG+SGFVP S  H    QK+
Sbjct:   68 FTSLNINDTREFFL-----LDYNIQSKQLIL---SIRRLEYIRAWKRIRQLLAEDSLLNVMIKGFNKGGMIINLEGISGFVPNS--HLGNFQKS 151          
The following BLAST results are available for this feature:
BLAST of EY674157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RR1_SPIOL3.677e-7567.4630S ribosomal protein S1, chloroplastic OS=Spinaci... [more]
RS1A_SYNY38.375e-2242.2230S ribosomal protein S1 homolog A OS=Synechocysti... [more]
RS1_SYNP66.881e-2139.3630S ribosomal protein S1 OS=Synechococcus sp. (str... [more]
RR1_PORPU8.474e-1348.0830S ribosomal protein S1, chloroplastic OS=Porphyr... [more]
RR1_PORYE2.411e-1247.0630S ribosomal protein S1, chloroplastic OS=Porphyr... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-042-F11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674157 ID=EY674157; Name=EY674157; organism=Citrus sinensis; type=EST; length=992bp
GCCCCTNACCCACCTGGNTCCCCGCGCCGCGGGNGGGGCTCTTGNTTTTT
AAATGGTNNNNNNNNNNNNNNNNNNNNNNNNNTTTCGTAAACCACGCGTC
CGGAACCATATTACCCTAAAAACTTGGCGAGCTGAAGGGAAAGCAAGAAT
GGCGACCTTGGCTCATTTGTTCACAGGACTAAGATGCCCACCAATCTCAC
ACACACGCCTCTCAAGAAGAAAATCGATTACCCAAATTCAACAAAAGCTT
CTGAATAGCAGAAAAAATAAAACGATAGTGTCAGCAGTGGCAATATCAAA
TGCAGAGACTAGAGAGAGGGAGGAGCTCAATCAGCTCTTTGAAGAAGCTT
ACGAACGGTGTCGTACTGCTCCCATGGAAGGCGTCTCTTTCACTCTCGAG
GAGTTTCACTCTGCTCTTGAGAAGTATGACTTCAATTCTGAATTAGGCAC
TAAAGTAAAGGGAACAGTTTTTTGTACAGATAACCGTGGAGCACTGGTCG
ATATTACTGCAAAGTCATCTGCTTATTTGCCTACCCAAGAGGCATGCATT
CACAAGATTAAACATGTACAAGAGGCAGGTATACTTCCGGGGTTGAAGGA
GGAGTTTGCAATTATTGGTGAAAATGAAGCTGATGATAGCTTGGCCTTGA
GCCCTACGGATGATCCACTACCAGCTTGCCTGGGATAGATGTAGGCAGCT
GCAATCTGACGACGTTGGCGCAAAGGGCAAGGTTGCTGGTGCAAACAAAC
GTGGAGTGGTTCCTGAAGTGGAGGGCCTCTCCGGATTTGTCCCTTTCTCC
CCCATTCATCCAAATCCCCTGCAGAAAACCTCTCCGGAAAGACCTCCCTC
TCAAGCTTGCGGAGGTTGATGAAGGACAGTCTACGCTTTGCCCAAATAAC
CCCACGGCATGGCCGACAGCCAGCCCCACCTAGCAATTGCATCCCGGCCC
CTGGTACTGAACACGAGCCTGAAACCCTTGGGCCTCTCATGA
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