EY674155

Overview
NameEY674155
Unique NameEY674155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length952
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY674155 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.284e-43
Identity = 93/187 (49.73%), Postives = 118/187 (63.10%), Query Frame = 2 
Query:  236 MDGGGGYNPRTVEEVFGDFRGRRAGMIKALTTEAEEIYRQCDPEKENLCLYGFPSEQWXXXXXXXXXXXXXXXXXXRINFARDGMQENDWLSLDGVHSDAWLLSVAFYFGARFGSDRSDTKRLFKYDK*ACNNI*GRDRDDAETCQEKVFCGKSWEPGNVNQTQ---KRCSDTQPYFIEAAPSNDEK 787
            M+ GG YNPRTVEEVF DF+GRRAGMIKALTT+ +E +R CDPEKENLCLYG P+E W                   INFARDGM E DWLSL  VHSDAWLL+VAF+FGARFG D++D KRLF       N++       A T +++     S    + N+++   KR S+++  F +  P +DE+
Sbjct:    1 MEAGGAYNPRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFN----MVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSKRGSESRAKFSKPEPKDDEE 183

HSP 2 Score: 25.7942 bits (55), Expect = 2.284e-43
Identity = 10/13 (76.92%), Postives = 10/13 (76.92%), Query Frame = 1 
Query:  826 GETLCGACGEDNA 864
            GET CGACGE  A
Sbjct:  198 GETQCGACGESYA 210
The following BLAST results are available for this feature:
BLAST of EY674155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH2.284e-4349.73PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-041-G12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674155 ID=EY674155; Name=EY674155; organism=Citrus sinensis; type=EST; length=952bp
GTCGTGCTTNNNNCCCCTTTTNNTCCCAANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGCGAAAACCAGGCGTCCGATTGTTGCTTGCANAGGACAAAC
TATTGTCACATCTATGCCTCCTTTACTCTTGACTCTCGCTCTTTCTCGCC
AATTTCGAACTTCGATCTCTCTTCTCTGGAAATCTGAAAACAAACGACGA
AAAAGAAAAAGAGTGCGATAGAATTTGATTCAGTGATGGACGGAGGTGGA
GGCTACAATCCGCGTACGGTAGAAGAAGTTTTTGGGGATTTCAGGGGCCG
AAGAGCTGGCATGATTAAAGCCCTTACTACTGAGGCTGAAGAGATTTACC
GCCAGTGTGACCCTGAGAAGGAAAATCTTTGCCTCTACGGTTTTCCAAGC
GAGCAGTGGGAGGTAAACTTACCTGCTGAAGAAGTGCCTCCTGAGCTTCC
AGAGCCTGCATAGAGAATCAACTTTGCCAGAGATGGGATGCAAGAAAACG
ACTGGTTGTCTTTGGATGGTGTCCACAGCGATGCTTGGTTACTCTCCGTG
GCCTTTTACTTTGGTGCTAGGTTTGGTTCTGATAGATCTGATACGAAACG
CCTTTTTAAGTATGATAAATGAGCTTGCAACAATATTTGAGGGCGCGACA
GGGACGACGCAGAAACATGCCAAGAAAAAGTCTTCTGTGGCAAATCATGG
GAGCCCGGAAATGTCAATCAGACTCAAAAGCGATGCTCTGATACTCAACC
CTACTTTATTGAGGCAGCGCCCTCAAATGATGAAAAAAATTGAAGATTGG
TGACAGGAATATGACGAGGAAGACGGGCGAGACACTGTGTGGGGCTTGTG
GGGAGGACAATGCACCCCACACTTCTGGATTTGCTGTGATGCCGGAGACA
AAAGTTCCATGGCAAGGTGTCTAATACACCCCTAAGGCTGGAGACATTAA
CA
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