EY674147

Overview
NameEY674147
Unique NameEY674147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length979
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674147 vs. ExPASy Swiss-Prot
Match: GCP3_XENLA (Gamma-tubulin complex component 3 homolog OS=Xenopus laevis GN=tubgcp3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.826e-13
Identity = 54/200 (27.00%), Postives = 79/200 (39.50%), Query Frame = 2
Query:   92 CQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEXXXXXXXXXXXHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLILRFRSHADRLYE-GIRELQARTMEXXXXXXXXXXXXXQTNDMHTKPGSW-----LSDGRIALTQRAGEFLPNMEQELDATPNEYTSLLEVFLTQLPVHKHAHLKFPPIRTGLTDFYTRFAP 673
            C +L  EM HF+  +QYYI FEVLE SW    N++            H+ +L +I  + LL   S++L   L  +FD I+ F++  D LY   + ELQ R                +        G W       D      Q   E +P M  +L    + Y  +++ FL  L       L+F   R    + Y    P
Sbjct:  703 CHILASEMVHFIHQMQYYITFEVLECSWDELWNKVLKAQDLDHIIAAHDVFLDTIISRCLLDSESRALLNQLRAVFDQIIEFQNAQDALYRAALEELQQRLQ------------FEERKKERESEGEWGVTAAEEDVENKRIQEFQESIPKMRSQLRILTHFYQGIVQQFLVLLTTSTDESLRFLSFRLDFNEHYKAREP 890          
BLAST of EY674147 vs. ExPASy Swiss-Prot
Match: GCP3_HUMAN (Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 4.067e-13
Identity = 54/200 (27.00%), Postives = 82/200 (41.00%), Query Frame = 2
Query:   92 CQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEXXXXXXXXXXXHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLILRFRSHADRLYE-GIRELQARTMEXXXXXXXXXXXXXQTNDMHTKPGSW--LSDGRIALTQRAGEF---LPNMEQELDATPNEYTSLLEVFLTQLPVHKHAHLKFPPIRTGLTDFYTRFAP 673
            C +L  EM HF+  +QYYI FEVLE SW    N+++           HE +L +I  + LL   S++L   L  +FD I+  ++  D +Y   + ELQ R                +        G W   +       +R GEF   +P M  +L    + Y  +++ FL  L       L+F   R    + Y    P
Sbjct:  704 CHILASEMVHFIHQMQYYITFEVLECSWDELWNKVQQAQDLDHIIAAHEVFLDTIISRCLLDSDSRALLNQLRAVFDQIIELQNAQDAIYRAALEELQRRLQ------------FEEKKKQREIEGQWGVTAAEEEEENKRIGEFKESIPKMCSQLRILTHFYQGIVQQFLVLLTTSSDESLRFLSFRLDFNEHYKAREP 891          
BLAST of EY674147 vs. ExPASy Swiss-Prot
Match: GCP3_MOUSE (Gamma-tubulin complex component 3 OS=Mus musculus GN=Tubgcp3 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.308e-11
Identity = 53/200 (26.50%), Postives = 80/200 (40.00%), Query Frame = 2
Query:   92 CQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEXXXXXXXXXXXHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLILRFRSHADRLYE-GIRELQARTMEXXXXXXXXXXXXXQTNDMHTKPGSW--LSDGRIALTQRAGEF---LPNMEQELDATPNEYTSLLEVFLTQLPVHKHAHLKFPPIRTGLTDFYTRFAP 673
            C +L  EM HF+  +QYYI FEVLE SW    N ++           HE +L++I  + LL   S+ L   L  +FD I+  ++  D +Y   + ELQ R                +        G W   +       +R  EF   +P M  +L    + Y  +++ FL  L       L+F   R    + Y    P
Sbjct:  702 CHILASEMVHFIHQMQYYITFEVLECSWDELWNRVQQAQDLDHIIAAHEAFLNTITSRCLLDSNSRVLLNQLRAVFDQIIELQNAQDVMYRAALEELQRRLQ------------FEEKKKQREIEGQWGVTAAEEEEENKRIREFQDSIPKMCSQLRILTHFYQGVVQQFLVLLTTSSDESLQFLSFRLDFNEHYKAREP 889          
The following BLAST results are available for this feature:
BLAST of EY674147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GCP3_XENLA1.826e-1327.00Gamma-tubulin complex component 3 homolog OS=Xenop... [more]
GCP3_HUMAN4.067e-1327.00Gamma-tubulin complex component 3 OS=Homo sapiens ... [more]
GCP3_MOUSE1.308e-1126.50Gamma-tubulin complex component 3 OS=Mus musculus ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-030-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674147 ID=EY674147; Name=EY674147; organism=Citrus sinensis; type=EST; length=979bp
GAATTTTTATANNNNTTATGGTNNNNNNNNNNNNNNNNNNNNNNNNNNTT
CCTCGACCACNCGTCCGCGGACGCGTGGGCGGACGCGTGGGTGCCAGGTT
CTTTGGGATGAGATGAATCATTTTGTCACAAATCTGCAATATTATATTAT
GTTTGAGGTCTTGGAGGTGTCTTGGTCTAATTTCTCAAATGAAATGGAAG
CAGCCAAAGATCTAGACGATCTACTTGCAGCACATGAGAAGTACCTCCAC
TCTATATTTGAGAAGTCTCTCCTTGGTGAACGATCACAATCGCTTTTCAA
GTCTCTCTTTGTCTTGTTTGACCTCATATTGCGATTCAGAAGTCATGCAG
ATAGGTTATATGAAGGAATTCGTGAGTTGCAAGCTAGAACCATGGAATCA
TCTTTATCCTCACGAGACAAGAAAAAATCATCGAGACAAACGAATGATAT
GCACACAAAACCTGGTTCATGGCTCAGTGATGGCAGGATAGCTCTAACAC
AACGTGCGGGTGAATTTCTTCCAAATATGGAACAAGAGCTGGATGCAACA
CCAAATGAATACACGTCATTGCTTGAGGTTTTCTTAACTCAGTTGCCTGT
GCACAAACATGCCCACTTAAAATTTCCTCCTATCCGGACTGGCCTTACTG
ATTTTTACACTCGGTTTGCTCCCAGTGTGTAGTAAAGCTGGCCATACCTT
ACACTTCCAGGGTTTTTTTTTACACCTCAATGGCAGAAAAAGTTGTCAAC
TTGCTAATTGATTGCCCCATGGGCAAGGGAAACATCAATTTGGTTGCTTG
GCTGAACTTTTATACCAACCTGAACCGCTTTCCTATGGGATGGACACTAA
ATGGTTTTTTCTCGGTTCTTTATAAATAGGTGCACAATTTTCAAATTTAT
AAGAAGAGACAATATAATACTAAAACCATATGTGTAAACTACCCTGGCCC
CCGTTTACATATGTAAGATGCACGCTATT
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