EY685207

Overview
NameEY685207
Unique NameEY685207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685207_ssr408 microsatellite EY685207_ssr408:408..419. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig979 contig Csv1_Contig979:403..1023. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY685207 vs. ExPASy Swiss-Prot
Match: RN157_XENLA (RING finger protein 157 OS=Xenopus laevis GN=rnf157 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.794e-23
Identity = 58/121 (47.93%), Postives = 76/121 (62.81%), Query Frame = 2
Query:   20 NSQITQAVFEKEK-GEYQVRVVKQILWVNGMRYELQEIYGIGN---SVDGDV---DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEI----KVNGP 349
            +S +  A FEK   G + V+ +KQ   V+G+ Y LQEIYGI N   S D  V   + +D   ECV+CLS+ RDT +LPCRH+C+C+ CA  LR+Q + CPICR P   LL+I    KV GP
Sbjct:  214 HSHVLMATFEKHADGSFCVKPLKQKQVVDGVSYLLQEIYGIENKYNSQDSKVAEDELSDNSAECVVCLSDVRDTLILPCRHLCLCNACADTLRYQASNCPICRLPFRALLQIRAMRKVPGP 334          
BLAST of EY685207 vs. ExPASy Swiss-Prot
Match: MGRN1_RAT (Probable E3 ubiquitin-protein ligase MGRN1 OS=Rattus norvegicus GN=Mgrn1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.755e-22
Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = 2
Query:   20 NSQITQAVFEKE-KGEYQVRVVKQILWVNGMRYELQEIYGIGNSVD-----GDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 337
            ++ +  A FEK   G + V+ +KQ   V+ + Y LQEIYGI N  +      D + +D   ECV+CLS+ RDT +LPCRH+C+C+ CA  LR+Q N CPICR P   LL+I+
Sbjct:  217 HAHVLLAAFEKHVDGSFSVKPLKQKQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSSECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIR 328          
BLAST of EY685207 vs. ExPASy Swiss-Prot
Match: MGRN1_MOUSE (Probable E3 ubiquitin-protein ligase MGRN1 OS=Mus musculus GN=Mgrn1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.755e-22
Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = 2
Query:   20 NSQITQAVFEKE-KGEYQVRVVKQILWVNGMRYELQEIYGIGNSVD-----GDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 337
            ++ +  A FEK   G + V+ +KQ   V+ + Y LQEIYGI N  +      D + +D   ECV+CLS+ RDT +LPCRH+C+C+ CA  LR+Q N CPICR P   LL+I+
Sbjct:  216 HAHVLLAAFEKHVDGSFSVKPLKQKQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSSECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIR 327          
BLAST of EY685207 vs. ExPASy Swiss-Prot
Match: MGRN1_HUMAN (Probable E3 ubiquitin-protein ligase MGRN1 OS=Homo sapiens GN=MGRN1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.755e-22
Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = 2
Query:   20 NSQITQAVFEKEK-GEYQVRVVKQILWVNGMRYELQEIYGIGNSVD-----GDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 337
            ++ +  A FEK   G + V+ +KQ   V+ + Y LQEIYGI N  +      D + +D   ECV+CLS+ RDT +LPCRH+C+C+ CA  LR+Q N CPICR P   LL+I+
Sbjct:  216 HAHVLLAAFEKHMDGSFSVKPLKQKQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIR 327          
BLAST of EY685207 vs. ExPASy Swiss-Prot
Match: RN157_MOUSE (RING finger protein 157 OS=Mus musculus GN=Rnf157 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.905e-22
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 2
Query:   44 FEKEK-GEYQVRVVKQILWVNGMRYELQEIYGIGNSVD------GDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 337
            FEK   G + V+ +KQ   V+G+ Y LQEIYGI N  +       + D +D   ECV+CLS+ RDT +LPCRH+C+C+ CA  LR+Q N CPICR P   LL+I+
Sbjct:  222 FEKHPDGTFCVKPLKQKQVVDGVSYLLQEIYGIENKYNTQDSKVAEDDVSDNSAECVVCLSDVRDTLILPCRHLCLCNTCADTLRYQANNCPICRLPFRALLQIR 326          
BLAST of EY685207 vs. ExPASy Swiss-Prot
Match: RN157_HUMAN (RING finger protein 157 OS=Homo sapiens GN=RNF157 PE=2 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 1.427e-21
Identity = 50/105 (47.62%), Postives = 68/105 (64.76%), Query Frame = 2
Query:   44 FEKEK-GEYQVRVVKQILWVNGMRYELQEIYGIGNSVD------GDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 337
            FEK   G + V+ +KQ   V+G+ Y LQEIYGI N  +       + + +D   ECV+CLS+ RDT +LPCRH+C+C+ CA  LR+Q N CPICR P   LL+I+
Sbjct:  222 FEKHTDGTFCVKPLKQKQVVDGVSYLLQEIYGIENKYNTQDSKVAEDEVSDNSAECVVCLSDVRDTLILPCRHLCLCNTCADTLRYQANNCPICRLPFRALLQIR 326          
BLAST of EY685207 vs. ExPASy Swiss-Prot
Match: MGRN1_DANRE (Probable E3 ubiquitin-protein ligase MGRN1 OS=Danio rerio GN=mgrn1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21
Identity = 49/112 (43.75%), Postives = 71/112 (63.39%), Query Frame = 2
Query:   20 NSQITQAVFEKE-KGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDVDA-----NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 337
            ++ +  A FE+   G + V+ +KQ   V+ + Y LQEIYGI N  + +  +     +D   ECV+CLS+ RDT +LPCRH+C+C+ CA  LR+Q N CPICR P   LL+I+
Sbjct:  214 HAHVLLAAFERHVDGSFSVKPLKQKQIVDRVSYLLQEIYGIENRNNQETKSTEDENSDNSSECVVCLSDLRDTLILPCRHLCLCNACADTLRYQANNCPICRLPFRALLQIR 325          
The following BLAST results are available for this feature:
BLAST of EY685207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RN157_XENLA5.794e-2347.93RING finger protein 157 OS=Xenopus laevis GN=rnf15... [more]
MGRN1_RAT3.755e-2245.54Probable E3 ubiquitin-protein ligase MGRN1 OS=Ratt... [more]
MGRN1_MOUSE3.755e-2245.54Probable E3 ubiquitin-protein ligase MGRN1 OS=Mus ... [more]
MGRN1_HUMAN3.755e-2245.54Probable E3 ubiquitin-protein ligase MGRN1 OS=Homo... [more]
RN157_MOUSE4.905e-2248.57RING finger protein 157 OS=Mus musculus GN=Rnf157 ... [more]
RN157_HUMAN1.427e-2147.62RING finger protein 157 OS=Homo sapiens GN=RNF157 ... [more]
MGRN1_DANRE2.434e-2143.75Probable E3 ubiquitin-protein ligase MGRN1 OS=Dani... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-B03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685207 ID=EY685207; Name=EY685207; organism=Citrus sinensis; type=EST; length=621bp
CTCTATTCCTGGACCTGCGAATTCTCAGATAACTCAGGCAGTGTTCGAGA
AGGAGAAAGGTGAATACCAGGTGAGGGTTGTGAAGCAGATTCTGTGGGTG
AATGGGATGAGGTATGAGCTGCAGGAGATATATGGGATTGGGAATTCTGT
TGATGGTGATGTCGATGCAAATGATCCAGGAAAAGAATGTGTGATTTGCC
TATCAGAACCACGGGACACAACTGTCCTTCCCTGCAGACACATGTGTATG
TGCAGTGGTTGTGCGAAGGTACTGAGGTTCCAAACGAATCGCTGCCCAAT
TTGCAGACAACCAGTTGAGAGACTTTTGGAGATAAAGGTTAATGGGCCTG
AAGAGTAGTGAACGAAGATGGAAGAAGTTGCTGCCGCTCAGTTTATGTAT
AGTAGTCTGTTGTTGTTGTCTTGCTTTCCATGCACTTCAAATTTATTTTT
CGTTCTTTCTTTCCCTTAGCCATTACCTGGAATTGTAATAATCAGACCGA
AAGTTATACTCCTTATAATCAGACTGAAAGTTTGTACTCCTTAAGTGCTA
GTATGGCACTACTATATTACTGACTGTATACAAAATATATAAGCCGGTTC
CTTGCAAAAAAAAAAAAAAAA
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