EY685045

Overview
NameEY685045
Unique NameEY685045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:434..1112. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY685045 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.356e-63
Identity = 114/124 (91.94%), Postives = 121/124 (97.58%), Query Frame = 1 
Query:   16 GLKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 387
            G KGIPYINTYDGRTIRYPDPLIKANDTIKLDLE NKITDFIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKG+KPWVSLPKGKGIKL+I+EEA+KR
Sbjct:  128 GQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTILEEAKKR 251
[Close]
BLAST of EY685045 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.169e-62
Identity = 114/124 (91.94%), Postives = 119/124 (95.97%), Query Frame = 1 
Query:   16 GLKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 387
            G KGIPY+NTYDGRTIRYPDPLIKANDTIKLDLE NKI DFIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKG+KPWVSLPK KGIKLSIIEEARKR
Sbjct:  132 GQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKRKGIKLSIIEEARKR 255
[Close]
BLAST of EY685045 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 238.039 bits (606), Expect = 3.402e-62
Identity = 112/124 (90.32%), Postives = 120/124 (96.77%), Query Frame = 1 
Query:   16 GLKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 387
            G KGIPY+NTYDGRTIRYPDPLIK NDTIKLDLEENKI +FIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:  132 GQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255
[Close]
BLAST of EY685045 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.402e-62
Identity = 112/124 (90.32%), Postives = 120/124 (96.77%), Query Frame = 1 
Query:   16 GLKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 387
            G KGIPY+NTYDGRTIRYPDPLIK NDTIKLDLEENKI +FIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:  132 GQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255
[Close]
BLAST of EY685045 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.444e-62
Identity = 111/124 (89.52%), Postives = 120/124 (96.77%), Query Frame = 1 
Query:   16 GLKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 387
            G KGIPY+NTYDGRTIRYPDPLIKANDTIKLDLE NKI DFIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFET+HIQD+ GHEFATRLGNVFT+GKG+KPWVSLPKGKGIKL+IIE+ARKR
Sbjct:  132 GQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLTIIEDARKR 255
[Close]
BLAST of EY685045 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3)

HSP 1 Score: 236.113 bits (601), Expect = 1.293e-61
Identity = 110/124 (88.71%), Postives = 119/124 (95.97%), Query Frame = 1 
Query:   16 GLKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 387
            G KGIPY+NTYDGRTIRYPDP+IKANDTIK+DLE NKI DFIKFDVGN+VMVTGGRN GRVG+IKNREKHKGSFETIH++DALGH+FATRLGNVFTIGKG+KPWVSLPKGKGIKLSIIEE RKR
Sbjct:  132 GQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255
[Close]
BLAST of EY685045 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 1.689e-61
Identity = 111/124 (89.52%), Postives = 119/124 (95.97%), Query Frame = 1 
Query:   16 GLKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 387
            G KGIPY+NTYDGRTIRYPDPLIK NDTIKLDLE NKI +FIKFDVGN+VMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:  132 GQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255
[Close]
BLAST of EY685045 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.880e-61
Identity = 109/124 (87.90%), Postives = 119/124 (95.97%), Query Frame = 1 
Query:   16 GLKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 387
            G KGIPY+NTYDGRTIRYPDPLIKANDTIK+DLE NKI DFIKFDVGN+VMVTGGRN GRVG+IKNREKHKGSFETIH++D+LGH+FATR+GNVFTIGKG+KPWVSLPKGKGIKLSIIEE RKR
Sbjct:  132 GQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255
[Close]
BLAST of EY685045 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 3.092e-47
Identity = 84/124 (67.74%), Postives = 104/124 (83.87%), Query Frame = 1 
Query:   16 GLKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 387
            G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  132 GTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of EY685045 vs. ExPASy Swiss-Prot
Match: RS4_XENLA (40S ribosomal protein S4 OS=Xenopus laevis GN=rps4 PE=2 SV=4)

HSP 1 Score: 188.348 bits (477), Expect = 3.092e-47
Identity = 84/124 (67.74%), Postives = 104/124 (83.87%), Query Frame = 1 
Query:   16 GLKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 387
            G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  132 GTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNNFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
The following BLAST results are available for this feature:
BLAST of EY685045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RS4_PRUAR2.356e-6391.9440S ribosomal protein S4 OS=Prunus armeniaca GN=RP... [more]
RS4_GOSHI1.169e-6291.9440S ribosomal protein S4 OS=Gossypium hirsutum GN=... [more]
RS42_ARATH3.402e-6290.3240S ribosomal protein S4-2 OS=Arabidopsis thaliana... [more]
RS41_ARATH3.402e-6290.3240S ribosomal protein S4-1 OS=Arabidopsis thaliana... [more]
RS4_SOLTU4.444e-6289.5240S ribosomal protein S4 OS=Solanum tuberosum GN=R... [more]
RS4_ORYSJ1.293e-6188.7140S ribosomal protein S4 OS=Oryza sativa subsp. ja... [more]
RS43_ARATH1.689e-6189.5240S ribosomal protein S4-3 OS=Arabidopsis thaliana... [more]
RS4_MAIZE2.880e-6187.9040S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 ... [more]
RS4_XENTR3.092e-4767.7440S ribosomal protein S4 OS=Xenopus tropicalis GN=... [more]
RS4_XENLA3.092e-4767.7440S ribosomal protein S4 OS=Xenopus laevis GN=rps4... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-008-A08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685045 ID=EY685045; Name=EY685045; organism=Citrus sinensis; type=EST; length=679bp
CCTTTCTGGCCAACTGGACTGAAAGGTATCCCATACATCAACACCTATGA
TGGGCGTACCATCCGCTACCCTGACCCACTCATCAAAGCCAATGATACCA
TCAAACTTGACTTAGAAGAGAACAAGATCACTGACTTCATCAAGTTTGAT
GTTGGGAATATTGTCATGGTCACTGGGGGTAGAAACAGAGGTCGAGTTGG
AATCATCAAGAACAGGGAAAAGCATAAGGGAAGTTTTGAGACCATCCATA
TTCAAGATGCCCTTGGTCATGAGTTTGCAACTCGTCTAGGCAATGTGTTC
ACCATCGGGAAGGGTTCAAAACCATGGGTGTCACTTCCTAAGGGCAAGGG
TATTAAGTTGTCCATCATTGAGGAAGCTAGGAAGAGACAGGCTGCCCAGG
CTGCTGCTTAAGCTTTTACAATGAATTTGGATGCATTTTGCTGCTTTGTT
TTTTCTTGTTGAATTAGAGCTGATTGGCACTCTCTAAAGCTGAAGTAGGA
CCGATGCAAAAATGAATCTTTATTTTTATTTTTATTTTTATCAGCACAAT
TTTGAACCTGCTTTGTCCTTTTTTATTTTAGCTACTATTTGGTGGATGTT
ATTTTCAACTATTTAATCTAAGTTCATGTATCTCTTTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAG
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