EY673889

Overview
NameEY673889
Unique NameEY673889
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length993
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY673889 vs. ExPASy Swiss-Prot
Match: CLPR1_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.195e-44
Identity = 106/213 (49.77%), Postives = 133/213 (62.44%), Query Frame = 3 
Query:  111 PKSSFIPNPKLLFST-PFSRTKRCVQRCSKYYNSPSAKSVNHIPKQFREENLQDGLMDNYKNVPRHLYGLTPSQMDMFMTEENPVCRQAASVTEETISSAHHYLNNGGMWSLSGMSDRGPSKYSMSVSMYR--GGGGVYDMXXXXXXXXXXXXXXXRIVYLGMPIVSAVTGLPNAQVKWLGFEKGLKA*KSKLNFLWGTRRKKRERVGTETEA 740
            PKS F+   KL  S  P S   R  +R S  + S    S +HIPKQFR +NL+DG+M N+KNVP++ YGL  +QMDMFMTE++PV RQA  VTEE+ISS ++YLNNGG+WS+SGM+     +YSMSV MYR  GGGG  +                RI YLGMPIV AVT L  AQ  WL ++   K     +N   GT+ +K E VG+ETEA
Sbjct:   25 PKSPFMSGSKLFSSNMPCSTVPRRTRR-SHCFASAKDMSFDHIPKQFRGDNLKDGVMQNFKNVPQYFYGLNSAQMDMFMTEDSPVRRQAEKVTEESISSRNNYLNNGGIWSMSGMNAADARRYSMSVQMYRGGGGGGGSERPRTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSP-GTQNEKMETVGSETEA 235
The following BLAST results are available for this feature:
BLAST of EY673889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CLPR1_ARATH1.195e-4449.77ATP-dependent Clp protease proteolytic subunit-rel... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-004-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY673889 ID=EY673889; Name=EY673889; organism=Citrus sinensis; type=EST; length=993bp
CAATCTTAAAAATTAAAGCAGAAAAATCCTCAATCTCTCTAATGGCAACT
TCTCTGCTATCTCCACTCTCATCACCATCAATAGAGCCACCGGCTCTTAC
CTCTAGCCACCCTAAATCTTCCTTCATCCCCAACCCCAAGCTCTTGTTCT
CGACGCCCTTTTCAAGAACAAAACGCTGTGTTCAACGATGCTCCAAGTAC
TACAACTCACCCTCTGCGAAGTCCGTGAATCATATTCCCAAGCAGTTCAG
AGAAGAAAATCTCCAAGATGGATTGATGGACAACTACAAGAATGTGCCCC
GTCACCTTTATGGCCTTACACCTTCACAGATGGACATGTTCATGACAGAA
GAGAACCCTGTGTGCCGGCAAGCAGCGAGTGTAACAGAGGAAACCATTTC
TTCTGCCCACCATTATTTGAATAATGGGGGGATGTGGAGTCTATCTGGCA
TGAGTGATAGGGGCCCTTCAAAGTATAGTATGAGTGTGAGCATGTATCGT
GGAGGAGGTGGAGTATATGATATGCCCCAATCTGCTCCTCCTGACTTACC
TTCTTTGCTGTTAGATGCTCGGATTGTCTATCTTGGAATGCCGATTGTAT
CTGCAGTGACTGGACTTCCTAATGCTCAAGTTAAGTGGTTGGGATTTGAA
AAAGGCCTCAAAGCCTAAAAATCTAAACTTAATTTCCTCTGGGGAACCAG
AAGGAAAAAAAGGGAAAGGGTGGGAACCGAAACGGAAGCATTAGGGAAAA
CCGGAAGCCAGGGCTTAATGGGAAACCAAAAGTCTATAACAGAAAATTTG
GGGGGGGGGAATTGGGTCAAAACAACAAGGGGTTCTATTTGGGGGGGAGA
AAAGGGGGTCCCCGGGGGGTTATACCACCAAATTTTTTTCCCCAAAAAAA
TTAATATTTTGTCCCCGGGGGTTTGTGGGAGGGGGGCGGGGGGGGGGGCC
CCCTGTTTACGCGGAAGAGGTGGGGGGGGGGGACAGGGGGGAA
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