EY684668

Overview
NameEY684668
Unique NameEY684668
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684668 vs. ExPASy Swiss-Prot
Match: TBC13_MOUSE (TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.869e-33
Identity = 81/210 (38.57%), Postives = 116/210 (55.24%), Query Frame = 3
Query:   57 EAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAVRITLCSWFSFCLFCAPYSIL*YPLGVQVQQSNIMLNLKNNI*VQENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSGDF 686
            E +  IL ++AKLNP I YVQGMNE++ P+YY F+TDP+ +         W                                    +E+AEAD+F CF  L+++  D+F + LD+S  GI   +  +   LK  D EL+  L+    IKPQF+AFRW+TLLL+QEF L  ++RIWD+L ++      +LL VCCAML+ ++ +LL GDF
Sbjct:  209 EVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSE---------W------------------------------------KEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDVELYLKLQ-EQSIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADGNRFDFLLL-VCCAMLILIREQLLEGDF 371          
BLAST of EY684668 vs. ExPASy Swiss-Prot
Match: YLOH_SCHPO (TBC domain-containing protein C1952.17c OS=Schizosaccharomyces pombe GN=SPAC1952.17c PE=2 SV=4)

HSP 1 Score: 111.694 bits (278), Expect = 4.615e-24
Identity = 72/225 (32.00%), Postives = 108/225 (48.00%), Query Frame = 3
Query:   54 QEAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAVRITLCSWFSFCLFCAPYSIL*YPLGVQVQQSNIMLNLKNNI*VQENAEADSFSCFVRLLSDSVDHFCQQLDNSSG-GILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPF-------------GIQHMLLRVCCAMLLCMKNRLLSGDF 686
            +EA   IL ++AKLNP I YVQGMNE+LAP+YYV +TDP  +N     LC                                          E D+F  F +++    D + + LD+ S  GI   +S   E LK  D ELW +LE   +I P +Y+FRW T LL+QEF L  ++R+WD+++++               G    L+  CC++L+ ++  +L  +F
Sbjct:  249 REAAERILFIYAKLNPGIGYVQGMNEILAPLYYVLATDPTYENYY---LC------------------------------------------ECDAFFLFTQMMVQVRDLYEKTLDHDSDHGIHFLMSKFTERLKKYDYELWENLE-EKQIHPTYYSFRWFTCLLSQEFPLPDVIRLWDSIIADQMKARLFGKNDDGFNGAYDFLMDFCCSILIELRESILERNF 427          
BLAST of EY684668 vs. ExPASy Swiss-Prot
Match: TB22A_MOUSE (TBC1 domain family member 22A OS=Mus musculus GN=Tbc1d22a PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.139e-14
Identity = 58/207 (28.02%), Postives = 95/207 (45.89%), Query Frame = 3
Query:   57 EAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTD-PDEQNAVRITLCSWFSFCLFCAPYSIL*YPLGVQVQQSNIMLNLKNNI*VQENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLL 674
            E    IL ++A  +P   YVQG+N+++ P + VF  +  D ++  ++ + S         P  +L                         N EAD++ C  +LL    D++      +  GI   +  L EL+   DE + RHL+  +E++   +AFRW+  LL +E  L+  +R+WDT  S P G  H  L VC A L+  +  +L
Sbjct:  299 EIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYTDREDVDKVDVSS--------VPAEVL------------------------RNIEADTYWCMSKLLDGIQDNYTF----AQPGIQMKVKMLEELVSRIDERVHRHLD-GHEVRYLQFAFRWMNNLLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLVRWRREIL 468          
BLAST of EY684668 vs. ExPASy Swiss-Prot
Match: TB22A_MACFA (TBC1 domain family member 22A (Fragment) OS=Macaca fascicularis GN=TBC1D22A PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.139e-14
Identity = 60/206 (29.13%), Postives = 93/206 (45.15%), Query Frame = 3
Query:   57 EAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAVRITLCSWFSFCLFCAPYSIL*YPLGVQVQQSNIMLNLKNNI*VQENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLL 674
            E    IL ++A  +P   YVQG+N+++ P + VF  +  E   V     S                  GV  +             V  N EAD++ C  +LL    D++      +  GI   +  L EL+   DE++ RHL+  +E++   +AFRW+  LL +E  L+  +R+WDT  S P G  H  L VC A L+  +  +L
Sbjct:  280 EIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVS------------------GVPAE-------------VLRNIEADTYWCMSKLLDGIQDNYTF----AQPGIQMKVKMLEELVSRIDEQVHRHLDQ-HEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLVRWRKEIL 449          
BLAST of EY684668 vs. ExPASy Swiss-Prot
Match: TB22A_HUMAN (TBC1 domain family member 22A OS=Homo sapiens GN=TBC1D22A PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.943e-14
Identity = 58/206 (28.16%), Postives = 91/206 (44.17%), Query Frame = 3
Query:   57 EAMRNILLLFAKLNPVIRYVQGMNEVLAPMYYVFSTDPDEQNAVRITLCSWFSFCLFCAPYSIL*YPLGVQVQQSNIMLNLKNNI*VQENAEADSFSCFVRLLSDSVDHFCQQLDNSSGGILSTLSHLAELLKANDEELWRHLEYTNEIKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLL 674
            E    IL ++A  +P   YVQG+N+++ P + VF  +  E   V     S     + C                               N EAD++ C  +LL    D++      +  GI   +  L EL+   DE++ RHL+  +E++   +AFRW+  LL +E  L+  +R+WDT  S P G  H  L VC A L+  +  +L
Sbjct:  300 EIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLC-------------------------------NIEADTYWCMSKLLDGIQDNYTF----AQPGIQMKVKMLEELVSRIDEQVHRHLDQ-HEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEIL 469          
BLAST of EY684668 vs. ExPASy Swiss-Prot
Match: TBC13_HUMAN (TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.149e-13
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 3
Query:  501 IKPQFYAFRWITLLLTQEFNLQPILRIWDTLLSNPFGIQHMLLRVCCAMLLCMKNRLLSGDF 686
            IKPQF+AFRW+TLLL+QEF L  ++RIWD+L ++      +LL VCCAML+ ++ +LL GDF
Sbjct:  186 IKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLL-VCCAMLMLIREQLLEGDF 246          
The following BLAST results are available for this feature:
BLAST of EY684668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TBC13_MOUSE1.869e-3338.57TBC1 domain family member 13 OS=Mus musculus GN=Tb... [more]
YLOH_SCHPO4.615e-2432.00TBC domain-containing protein C1952.17c OS=Schizos... [more]
TB22A_MOUSE1.139e-1428.02TBC1 domain family member 22A OS=Mus musculus GN=T... [more]
TB22A_MACFA1.139e-1429.13TBC1 domain family member 22A (Fragment) OS=Macaca... [more]
TB22A_HUMAN1.943e-1428.16TBC1 domain family member 22A OS=Homo sapiens GN=T... [more]
TBC13_HUMAN2.149e-1356.45TBC1 domain family member 13 OS=Homo sapiens GN=TB... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-002-A03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684668 ID=EY684668; Name=EY684668; organism=Citrus sinensis; type=EST; length=777bp
CCACGCGTCCGACTTTTCCCAACTGAACTATATATGTGATACATTTTATT
CTGCAGGAAGCAATGAGGAATATTCTTTTACTGTTTGCAAAACTGAATCC
TGTTATTCGCTATGTTCAAGGCATGAATGAAGTATTGGCACCAATGTACT
ATGTATTTAGTACTGATCCTGATGAACAAAATGCTGTAAGAATCACACTA
TGTTCTTGGTTTTCGTTTTGCTTGTTTTGTGCTCCGTACTCCATACTATA
ATATCCTCTTGGGGTCCAAGTCCAACAAAGTAACATCATGCTGAATTTGA
AGAATAATATTTGAGTTCAGGAAAATGCGGAGGCAGATAGTTTTTCTTGT
TTTGTTCGACTCTTAAGCGACTCAGTGGATCACTTTTGTCAACAATTGGA
TAATAGTTCGGGGGGTATCCTTTCAACTCTTTCTCACTTAGCAGAGTTAT
TGAAAGCTAATGATGAGGAATTGTGGCGGCACCTTGAATACACAAACGAG
ATTAAGCCACAATTTTATGCATTCAGGTGGATCACGTTGCTACTTACTCA
AGAATTCAATTTGCAGCCCATCTTAAGAATTTGGGATACTCTTTTGAGTA
ATCCCTTTGGCATTCAGCATATGCTGTTACGAGTCTGCTGTGCAATGCTA
CTGTGCATGAAAAACAGACTATTGAGCGGTGATTTCTAGCTAACTTACAC
TTTTTACACACTATCCTGATGTCAACATAAACACCCTCCTCAGGTAACCC
GGGAATTTAACCCTGAAACTCCTTCTG
back to top