EY702997 | Citrus Genome Database

Overview


Name	EY702997
Unique Name	EY702997
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	822

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig10028	contig	Csv1_Contig10028:1..822.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPA_ARATH (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.435e-34
Identity = 87/142 (61.27%), Postives = 96/142 (67.61%), Query Frame = 2

Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVGNSCFTHPFSSIFPHFFNYMDSMQIC*RNIGCEGREAWKRFFSKLCQDKHVLEVGGDNDFFANLV 436
            DDIGDV ITNDGATIL+MLE+EHPAAKVLVELAELQDREVGDGTTSVVIVAAE+LKRANDLVRNKIHPTSIISGYR+                   +  + +    I C    A     SKL        + GD+DFFANLV
Sbjct:   50 DDIGDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEEKLVTKVEKLGKVPL----INC----AKTSMSSKL--------ISGDSDFFANLV 175

[Close]

BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPA_DROME (T-complex protein 1 subunit alpha OS=Drosophila melanogaster GN=T-cp1 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 7.503e-32
Identity = 62/77 (80.52%), Postives = 73/77 (94.81%), Query Frame = 2

Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 241
            DDIGDV +TNDGATIL++LE+EHPAAKVLVELA+LQD EVGDGTTSVVI+AAE+LK A++LV+ KIHPTSIISGYR+
Sbjct:   50 DDIGDVTVTNDGATILRLLEVEHPAAKVLVELAQLQDEEVGDGTTSVVILAAELLKNADELVKQKIHPTSIISGYRI 126

HSP 2 Score: 28.8758 bits (63), Expect = 7.503e-32
Identity = 12/16 (75.00%), Postives = 15/16 (93.75%), Query Frame = 3

Query:  360 DSLVNCAKTSMSSKLV 407
            DSL+N AKTSMSSK++
Sbjct:  149 DSLINIAKTSMSSKII 164

[Close]

BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.158e-31
Identity = 62/77 (80.52%), Postives = 73/77 (94.81%), Query Frame = 2

Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 241
            DDIGDV ITNDGATILK+LE+EHPAAKVL ELA+LQD+EVGDGTTSVVI+AAE+LK A++LV+ KIHPTS+ISGYR+
Sbjct:   47 DDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRL 123

HSP 2 Score: 27.335 bits (59), Expect = 2.158e-31
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 3

Query:  360 DSLVNCAKTSMSSKLV 407
            D L+N AKTSMSSK++
Sbjct:  146 DCLINAAKTSMSSKII 161

[Close]

BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPA_HUMAN (T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.158e-31
Identity = 62/77 (80.52%), Postives = 73/77 (94.81%), Query Frame = 2

Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 241
            DDIGDV ITNDGATILK+LE+EHPAAKVL ELA+LQD+EVGDGTTSVVI+AAE+LK A++LV+ KIHPTS+ISGYR+
Sbjct:   47 DDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRL 123

HSP 2 Score: 27.335 bits (59), Expect = 2.158e-31
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 3

Query:  360 DSLVNCAKTSMSSKLV 407
            D L+N AKTSMSSK++
Sbjct:  146 DCLINAAKTSMSSKII 161

[Close]

BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.158e-31
Identity = 62/77 (80.52%), Postives = 73/77 (94.81%), Query Frame = 2

Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 241
            DDIGDV ITNDGATILK+LE+EHPAAKVL ELA+LQD+EVGDGTTSVVI+AAE+LK A++LV+ KIHPTS+ISGYR+
Sbjct:   47 DDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRL 123

HSP 2 Score: 27.335 bits (59), Expect = 2.158e-31
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 3

Query:  360 DSLVNCAKTSMSSKLV 407
            D L+N AKTSMSSK++
Sbjct:  146 DCLINAAKTSMSSKII 161

[Close]

BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPA2_MOUSE (T-complex protein 1 subunit alpha B OS=Mus musculus GN=Tcp1 PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 2.158e-31
Identity = 62/77 (80.52%), Postives = 73/77 (94.81%), Query Frame = 2

Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 241
            DDIGDV ITNDGATILK+LE+EHPAAKVL ELA+LQD+EVGDGTTSVVI+AAE+LK A++LV+ KIHPTS+ISGYR+
Sbjct:   47 DDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRL 123

HSP 2 Score: 27.335 bits (59), Expect = 2.158e-31
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 3

Query:  360 DSLVNCAKTSMSSKLV 407
            D L+N AKTSMSSK++
Sbjct:  146 DCLINAAKTSMSSKII 161

[Close]

BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.810e-31
Identity = 62/77 (80.52%), Postives = 73/77 (94.81%), Query Frame = 2

Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 241
            DDIGDV ITNDGATILK+LE+EHPAAKVL ELA+LQD+EVGDGTTSVVI+AAE+LK A++LV+ KIHPTS+ISGYR+
Sbjct:   47 DDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRL 123

HSP 2 Score: 26.9498 bits (58), Expect = 2.810e-31
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 3

Query:  360 DSLVNCAKTSMSSKLV 407
            D L+N AKTSMSSK++
Sbjct:  146 DCLINAAKTSMSSKVI 161

[Close]

BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPA_MONDO (T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.764e-31
Identity = 62/77 (80.52%), Postives = 72/77 (93.51%), Query Frame = 2

Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 241
            DDIGDV ITNDGATILK+LE+EHPAAKVL ELA+LQD+EVGDGTTSVVI+AAE+LK A++LV+ KIHPTSII GYR+
Sbjct:   47 DDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSIIGGYRL 123

HSP 2 Score: 27.335 bits (59), Expect = 4.764e-31
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 3

Query:  360 DSLVNCAKTSMSSKLV 407
            D L+N AKTSMSSK++
Sbjct:  146 DCLINAAKTSMSSKII 161

[Close]

BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPA_TETPY (T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.765e-31
Identity = 57/77 (74.03%), Postives = 75/77 (97.40%), Query Frame = 2

Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 241
            DD+GDV ITNDGATIL+ LE++HPAAKV+VEL++LQD+EVGDGTTSVVI+AAE+LKRAN+L++NK+HPTSII+G+++
Sbjct:   47 DDVGDVTITNDGATILRQLEVQHPAAKVIVELSQLQDKEVGDGTTSVVILAAELLKRANELIKNKVHPTSIITGFKI 123

HSP 2 Score: 27.7202 bits (60), Expect = 4.765e-31
Identity = 12/22 (54.55%), Postives = 18/22 (81.82%), Query Frame = 3

Query:  360 DSLVNCAKTSMSSKLVVTTTSL 425
            ++L+N AKTSMSSKL+   ++L
Sbjct:  146 EALINAAKTSMSSKLIGPESNL 167

[Close]

BLAST of EY702997 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 6.203e-31
Identity = 62/77 (80.52%), Postives = 72/77 (93.51%), Query Frame = 2

Query:   11 DDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 241
            DDIGDV ITNDGATILK+LE+EHPAAKVL ELAELQD+EVGDGTTSVVI+AAE+LK +++LV+ KIHPTSII GYR+
Sbjct:   50 DDIGDVTITNDGATILKLLEVEHPAAKVLCELAELQDKEVGDGTTSVVIIAAELLKNSDELVKQKIHPTSIIGGYRL 126

HSP 2 Score: 26.9498 bits (58), Expect = 6.203e-31
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 3

Query:  360 DSLVNCAKTSMSSKLV 407
            D L+N AKTSMSSK++
Sbjct:  149 DCLINSAKTSMSSKII 164

The following BLAST results are available for this feature:

BLAST of EY702997 vs. ExPASy Swiss-Prot

BLAST of EY702997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133


Match Name	E-value	Identity	Description
TCPA_ARATH	5.435e-34	61.27	T-complex protein 1 subunit alpha OS=Arabidopsis t...	[more]
TCPA_DROME	7.503e-32	80.52	T-complex protein 1 subunit alpha OS=Drosophila me...	[more]
TCPA_RAT	2.158e-31	80.52	T-complex protein 1 subunit alpha OS=Rattus norveg...	[more]
TCPA_HUMAN	2.158e-31	80.52	T-complex protein 1 subunit alpha OS=Homo sapiens ...	[more]
TCPA_CRIGR	2.158e-31	80.52	T-complex protein 1 subunit alpha OS=Cricetulus gr...	[more]
TCPA2_MOUSE	2.158e-31	80.52	T-complex protein 1 subunit alpha B OS=Mus musculu...	[more]
TCPA_BOVIN	2.810e-31	80.52	T-complex protein 1 subunit alpha OS=Bos taurus GN...	[more]
TCPA_MONDO	4.764e-31	80.52	T-complex protein 1 subunit alpha OS=Monodelphis d...	[more]
TCPA_TETPY	4.765e-31	74.03	T-complex protein 1 subunit alpha OS=Tetrahymena p...	[more]
TCPA_PALPA	6.203e-31	80.52	T-complex protein 1 subunit alpha OS=Paleosuchus p...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-014-F07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY702997 ID=EY702997; Name=EY702997; organism=Citrus sinensis; type=EST; length=822bp
CCACGCGTCCGATGACATTGGTGATGTAAAAATAACTAACGATGGTGCTA
CAATTCTCAAGATGTTAGAAATTGAGCATCCAGCTGCGAAGGTACTTGTG
GAGTTGGCTGAGCTTCAAGATAGGGAAGTTGGGGATGGAACAACATCAGT
GGTTATTGTTGCTGCAGAGATGCTGAAGAGGGCAAATGATCTGGTGAGGA
ATAAGATTCACCCAACATCTATTATCAGTGGATACAGAGTGGGTAACTCT
TGTTTCACTCATCCTTTTTCCTCCATATTTCCTCACTTTTTTAATTATAT
GGACAGCATGCAAATATGTTGAAGAAACATTGGTTGTGAAGGTAGAGAAG
CTTGGAAAAGATTCTTTAGTAAATTGTGCCAAGACAAGCATGTCCTCGAA
GTTGGTGGTGACAACGACTTCTTTGCTAATTTGGTGTGCCTTTGTCCCAA
AAATATGGATTTTCATTGATATATGTTCATATTCGTCTCACACCTTAATC
CTGCTTGCCATTATGCTGTATTTCCCCAACACTGAATTGATTACTGCAAC
ATCTATCAATATCTTATCTTAACCGAAAAGAAAAGAAAGAAACATTAATC
TCTATTATCTATTACTTATTTTAATTGTAATTAATGTTTTAATTTCTGTC
TAGGTTGGTAGATACAGTTCAGTCGGTAAAGATGACTAATCAACAAAGGG
GAGTCAACTACCCAATTAAGATTTGTATTTTTTGATTGTTCAAATATATT
GCCTGTAAGAACCTTGTATATTGATCCTATTATCATTATGGGATTGAAAA
GATGTGTTAAAAAAAAAAAAAA