EY702989

Overview
NameEY702989
Unique NameEY702989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702989_ssr372 microsatellite EY702989_ssr372:372..383. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY702989 vs. ExPASy Swiss-Prot
Match: GCFC_MOUSE (GC-rich sequence DNA-binding factor homolog OS=Mus musculus GN=Gcfc PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 7.731e-19
Identity = 68/258 (26.36%), Postives = 107/258 (41.47%), Query Frame = 3 
Query:   15 TMSSLKKTDEDLSSSLLK--------ITDLESSLSAAGEKFIFMQKLRDYVSVICDFLQDKAPYIETLEAEMQKLNKERASAILERRAADNDDEMTEVEAAIKAATLVIGDRGNXXXXXXXXXXXXXXXXXXXVKEQTNLPVKLDEFGRDMNLQ----KRRDMERRAESRQHRRTRFDLKQLSSMDADISSQKLEGXXXXXXXXXXXXAYQSNREELLKTAEHIFSDAAEEYSQLSVVKERFEKWKRDYSSSYRDAYI 752
            +M  L KT++      L+        I  LE S    GE++ F+Q++R YV  + +   +K P I  LE+ + +L K+RAS +++RR  D  DE +E  +                                    Q  +   LD FGRD  L     KRR  ER A   + R+ R    Q++     +SS   E              +   ++ +LK +  +F D  E +  +  +K +FE W+  Y  SY+DAYI
Sbjct:  401 SMKELHKTNQQQHEKHLQSRVDSTRAIERLEGSSGGIGERYKFLQEMRGYVQDLLECFSEKVPLINELESAIHQLYKQRASRLVQRRQDDIKDESSEFSSH---------------------------------SSQALMAPNLDSFGRDRALYQEHAKRRIAEREARRTRRRQAREQTGQMADHLEGLSSDDEETSTDITN-------FNLEKDRILKESSKVFEDVLESFYSIDCIKAQFEAWRSKYYMSYKDAYI 618

HSP 2 Score: 24.6386 bits (52), Expect = 7.731e-19
Identity = 10/23 (43.48%), Postives = 13/23 (56.52%), Query Frame = 1 
Query:  751 LSLNTPGYLAPYVRLELLKWDPL 819
            + L  P    P +RL+LL W PL
Sbjct:  618 IGLCLPKLFNPLIRLQLLTWTPL 640
The following BLAST results are available for this feature:
BLAST of EY702989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GCFC_MOUSE7.731e-1926.36GC-rich sequence DNA-binding factor homolog OS=Mus... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-014-E11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702989 ID=EY702989; Name=EY702989; organism=Citrus sinensis; type=EST; length=904bp
CCACGCGTCCGAGAACTATGTCATCACTGAAAAAAACGGATGAAGATTTG
TCTTCCTCGCTCCTGAAAATTACTGATCTCGAAAGCTCTTTATCTGCTGC
TGGTGAGAAGTTCATCTTCATGCAGAAGCTTCGAGACTACGTGTCTGTTA
TATGTGATTTTTTGCAGGATAAAGCACCCTACATTGAGACACTTGAAGCA
GAGATGCAAAAACTCAATAAAGAGCGTGCATCTGCCATTTTAGAGAGAAG
AGCTGCTGATAATGATGATGAAATGACTGAGGTAGAAGCAGCTATAAAAG
CAGCCACATTAGTGATCGGTGATCGTGGAAACAGTGCTTCTAAGCTCATA
GCTGCAAGTAGTGCAGCTCAGGCTGCTGCTGCTGCCGCCGTCAAGGAACA
AACAAATTTACCGGTGAAGTTGGATGAATTTGGTAGAGATATGAACCTGC
AGAAACGTAGGGATATGGAGCGGAGAGCTGAATCGCGTCAACATAGGAGA
ACCCGATTTGATTTAAAGCAATTATCATCCATGGATGCAGACATTTCTTC
TCAGAAACTGGAAGGAGAATCTACTACTGATGAAAGTGATAGCGAGACTG
AAGCATACCAATCAAATCGTGAGGAGTTGCTCAAGACTGCTGAACATATT
TTTAGTGATGCAGCTGAGGAGTACTCCCAACTTTCAGTGGTAAAAGAAAG
GTTTGAGAAATGGAAGAGAGACTATTCATCAAGCTACCGTGATGCCTATA
TTGTCACTAAATACTCCTGGCTATCTGGCTCCATATGTGAGGCTGGAGCT
CCTGAAGTGGGACCCTCTCATGAGGATGCCGATTTTCTGAAATGAATGGA
TAATTTCCTGTCCAATATGGGTTACCCAAGGATGGGGAAACTTCCCCCTG
ATGA
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