EY702985

Overview
NameEY702985
Unique NameEY702985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10234 contig Csv1_Contig10234:79..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY702985 vs. ExPASy Swiss-Prot
Match: TMP14_ARATH (Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.722e-39
Identity = 89/164 (54.27%), Postives = 104/164 (63.41%), Query Frame = 3 
Query:  138 TLVDAKAP-RQSAPASTQCXXXXXXXXXXXXXXXXXWKATTYCRKMARNVMAMAT---GEAPA---EVAATELPEIVKTVQEAWDKVEDKYAVTSLAVTVAIAVWGSTGMISAIDRXXXXXXXXXXXXIGYTGWFAYKNLVFKPDREALIQKIKDTYKDIIGSS 608
            T++D++AP  + A AS                     KAT YCRK+ RNV+  AT   GEAPA   E   TELPEIVKT QEAW+KV+DKYA+ SLA    +A+WGS GMISAIDR            IGYTGWF YKNLVFKPDREAL +K+K TYKDI+GSS
Sbjct:   11 TIIDSRAPPSRLASASASSPSCISLPTLPIQSHTRAAKATAYCRKIVRNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS 174
The following BLAST results are available for this feature:
BLAST of EY702985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TMP14_ARATH1.722e-3954.27Thylakoid membrane phosphoprotein 14 kDa, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-014-E07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702985 ID=EY702985; Name=EY702985; organism=Citrus sinensis; type=EST; length=905bp
CCACGCGTCCGCAATAAACCACAACAAAATTAATTAACAATTATTTGCAA
CATTTTTCTTCAATTTTTGCCTCCTCTGTCTTCTCACAGGATCCCGTAGC
CATGGCCTCCAGCGCACTCTCAATCTCTTCCTCCTCAACTCTTGTTGATG
CCAAGGCTCCTCGCCAGTCCGCTCCTGCCTCAACACAATGTGTGTCTCTT
CCTACACTCCCACCACCGCCGGTTCCCTCTCAAACCCGCCCTTGGAAGGC
AACTACATATTGTCGAAAGATGGCCCGCAATGTCATGGCTATGGCAACAG
GGGAGGCTCCAGCTGAAGTTGCTGCAACTGAGCTTCCAGAGATTGTCAAG
ACCGTGCAAGAAGCTTGGGACAAAGTTGAAGATAAGTATGCAGTGACTTC
ACTTGCTGTAACTGTTGCTATTGCCGTATGGGGCTCTACGGGAATGATTT
CGGCAATTGATAGGCTTCCTTTAGTTCCTGGAGTTCTCGAGCTTGTCGGC
ATTGGCTACACCGGGTGGTTTGCATACAAGAACCTGGTTTTCAAACCAGA
CAGGGAAGCATTAATACAGAAAATAAAAGACACATACAAGGATATAATAG
GGAGCAGCTGAAGGAAACCAAAGGAATAGTACGGCTGCTGAGATGATGAG
GTAAAAGTTTCACTTTTTGAAGCGAATATCTTGCAGCATTAATTGAGTAT
AAGAATGTAAACAACAATGCTTCTTCTGTTGGCATTAGTTCCTAACCAGA
GTAAATTAAACTCATGTGATGTACTTCTATCCTTTAAATACATGTTTGTA
ACTACTAAATATTCCCCTTTGCCTTTCTTTCCNNTATCTGAANGCCCTGA
AACACNTTAATAGAAAAGTCACTCATGAGTTNATGAAAAAAAAAAAAAGG
GCGCC
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