EY702978

Overview
NameEY702978
Unique NameEY702978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702978_ssr34 microsatellite EY702978_ssr34:34..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY702978 vs. ExPASy Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.202e-47
Identity = 89/96 (92.71%), Postives = 94/96 (97.92%), Query Frame = 2
Query:  242 MKESGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCLGAIASLQ 529
            MKES RKQGA SPCAACKLLRRRCAQDCVF+PYFPADEPQKFANVH+VFGASNVNKMLQELP+HQRGDAVSSMVYEANARVRDPVYGC+GAI+SLQ
Sbjct:    1 MKESSRKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQ 96          
BLAST of EY702978 vs. ExPASy Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 7.306e-37
Identity = 70/85 (82.35%), Postives = 80/85 (94.12%), Query Frame = 2
Query:  275 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCLGAIASLQ 529
            SPCA+CKLLRRRCA+DC+FAPYFP D+P KFA VHKVFGASNV+KMLQELPVHQR DAV+S+V+EANARVRDPVYGC+GAI+ LQ
Sbjct:    7 SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVNSLVFEANARVRDPVYGCVGAISYLQ 91          
BLAST of EY702978 vs. ExPASy Swiss-Prot
Match: LBD3_ARATH (LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.112e-34
Identity = 68/97 (70.10%), Postives = 79/97 (81.44%), Query Frame = 2
Query:  242 MKESGRKQGAP-SPCAACKLLRRRCAQD-CVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCLGAIASL 526
            M++ G + G   SPCA CKLLRR+C +D CVFAPYFPA EP KFA VHK+FGASNVNKMLQEL  + R DAV SMVYEANAR++DPVYGC+G I+SL
Sbjct:    1 MRQKGHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSL 97          

HSP 2 Score: 26.1794 bits (56), Expect = 2.112e-34
Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  532 QIDVLQTQLARLKAEVVHL 588
            Q++ LQTQLA  +AE++H+
Sbjct:  100 QLETLQTQLAFAQAELIHI 118          
BLAST of EY702978 vs. ExPASy Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 5.418e-32
Identity = 62/85 (72.94%), Postives = 74/85 (87.06%), Query Frame = 2
Query:  275 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCLGAIASLQ 529
            +PCAACKLLRRRCAQ+C F+PYF   EP KFA+VHKVFGASNV+KML E+P  QR DA +S+VYEAN R+RDPVYGC+GAI++LQ
Sbjct:   44 TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQ 128          
BLAST of EY702978 vs. ExPASy Swiss-Prot
Match: LOB_ARATH (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.242e-32
Identity = 62/85 (72.94%), Postives = 71/85 (83.53%), Query Frame = 2
Query:  275 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCLGAIASLQ 529
            SPCAACK LRR+C   C+FAPYFP +EP KFANVHK+FGASNV K+L EL  HQR DAV+S+ YEA ARVRDPVYGC+GAI+ LQ
Sbjct:   10 SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQ 94          
BLAST of EY702978 vs. ExPASy Swiss-Prot
Match: LBD25_ARATH (LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 1.207e-31
Identity = 60/85 (70.59%), Postives = 73/85 (85.88%), Query Frame = 2
Query:  275 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCLGAIASLQ 529
            SPCAACK LRR+C  DCVFAPYFP +EP KFANVH++FGASNV+K+L E+  HQR DAV+S+ YEA AR++DPVYGC+GAI+ LQ
Sbjct:   38 SPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQ 122          
BLAST of EY702978 vs. ExPASy Swiss-Prot
Match: LBD36_ARATH (LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.587e-31
Identity = 65/105 (61.90%), Postives = 78/105 (74.29%), Query Frame = 2
Query:  275 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCLGAIASLQIK*TCYRPNWPGSKPRWCTY 589
            SPCAACK LRR+C Q+CVFAPYFP D+PQKFA VHKVFGASNV K+L EL  +QR DAV+S+ YEA AR+RDPVYGC+G I+ LQ +      +   +K    TY
Sbjct:    6 SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVNSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATY 110          
BLAST of EY702978 vs. ExPASy Swiss-Prot
Match: LBD6_ARATH (LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.824e-31
Identity = 61/85 (71.76%), Postives = 71/85 (83.53%), Query Frame = 2
Query:  275 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCLGAIASLQ 529
            SPCAACK LRR+C  +CVFAPYFP D+PQKFANVHKVFGASNV K+L EL   QR DAV+S+ YEA+ R+RDPVYGC+G I+ LQ
Sbjct:    8 SPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDAVNSLAYEADMRLRDPVYGCVGVISLLQ 92          
BLAST of EY702978 vs. ExPASy Swiss-Prot
Match: LBD13_ARATH (LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.743e-30
Identity = 60/85 (70.59%), Postives = 73/85 (85.88%), Query Frame = 2
Query:  275 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCLGAIASLQ 529
            +PCAACKLLRRRCA++C F+PYF   EP KFA VHKVFGASNV+KML E+   QRGDA +S+VYEAN R+RDP+YGC+GAI++LQ
Sbjct:   51 TPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQ 135          
BLAST of EY702978 vs. ExPASy Swiss-Prot
Match: LBD6_MAIZE (LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.883e-30
Identity = 60/88 (68.18%), Postives = 70/88 (79.55%), Query Frame = 2
Query:  266 GAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCLGAIASLQ 529
            G  SPCAACK LRR+C  DCVFAPYFP D PQKF +VH+VFGASNV K+L EL   QR DAV+S+ YEA+ R+RDPVYGC+G I+ LQ
Sbjct:   29 GTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVNSLAYEADMRLRDPVYGCVGVISILQ 116          
The following BLAST results are available for this feature:
BLAST of EY702978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
LBD4_ARATH1.202e-4792.71LOB domain-containing protein 4 OS=Arabidopsis tha... [more]
LBD12_ARATH7.306e-3782.35LOB domain-containing protein 12 OS=Arabidopsis th... [more]
LBD3_ARATH2.112e-3470.10LOB domain-containing protein 3 OS=Arabidopsis tha... [more]
LBD15_ARATH5.418e-3272.94LOB domain-containing protein 15 OS=Arabidopsis th... [more]
LOB_ARATH9.242e-3272.94Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis th... [more]
LBD25_ARATH1.207e-3170.59LOB domain-containing protein 25 OS=Arabidopsis th... [more]
LBD36_ARATH4.587e-3161.90LOB domain-containing protein 36 OS=Arabidopsis th... [more]
LBD6_ARATH7.824e-3171.76LOB domain-containing protein 6 OS=Arabidopsis tha... [more]
LBD13_ARATH1.743e-3070.59LOB domain-containing protein 13 OS=Arabidopsis th... [more]
LBD6_MAIZE3.883e-3068.18LOB domain-containing protein 6 OS=Zea mays GN=LBD... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-014-D11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702978 ID=EY702978; Name=EY702978; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGCAATCTCTCTCCTTTGCTTCTTTTCTTCTTCTTCTTCTT
CTTCTTCGTCTTCCTCTTTACTGTATCTTTCAACTCTCTTTTGCGTTTAA
TTAAGCTTCCAAATCTAAACATATGCTATAACCCTAAAAATTCCTTTTGG
CTTTTATTTTAAGGGAAAGTGCCCTAGGTGGTGCCTTAAATTCTTAACAG
GGTAGATACTTAGTGGGGTTTAGGGGGGGACACGTGGCAGGATGAAGGAG
AGTGGTAGGAAACAAGGTGCACCATCACCATGTGCAGCATGCAAGCTTCT
AAGGAGAAGGTGTGCCCAGGATTGCGTTTTTGCCCCTTATTTTCCAGCTG
ATGAGCCTCAGAAATTTGCTAATGTGCACAAGGTTTTTGGTGCTAGCAAT
GTCAACAAGATGCTACAGGAATTGCCAGTGCACCAAAGAGGAGATGCTGT
GAGCAGCATGGTGTATGAAGCGAACGCAAGAGTTCGTGATCCAGTGTACG
GTTGCCTTGGAGCCATTGCGTCTCTGCAAATCAAATAGACGTGCTACAGA
CCCAATTGGCCCGGCTCAAAGCCGAGGTGGTGCACTTACCGGTTCGCCAA
ACTGCGTCCTTGTCGACCACGGGTTCGGCCCGGCAGCCCAAACAACATCG
GCTTTCCCCCGTCCAAGCTCGTGGCCTTCTCAAACAATCCCATCTACCAC
ATGACTTTGGCCATTATGAAGAATCAATGGGACTTGTTAACTCACCCCGC
CTCTATTGATAAACCATTTCAATAGCATAAATATTAAGAGTTCCCTTTCT
GTTTTTTAGTGTCATTTAATAACTGATCATACCCTATTTACATGGGGTAT
AGGCTC
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