EY702945 | Citrus Genome Database

Overview


Name	EY702945
Unique Name	EY702945
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	890

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
EY702945_ssr38	microsatellite	EY702945_ssr38:38..49.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8493	contig	Csv1_Contig8493:89..981.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY702945 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 2.249e-94
Identity = 149/199 (74.87%), Postives = 164/199 (82.41%), Query Frame = 2

Query:  101 IGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVSGAEYYRITNGLDLEDK 697
            +G  EMLG PLN  +  R+SAP AS+PSTFK VALF                   ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+VL+ GAEYYRITNGLD EDK
Sbjct:    4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDK 199

HSP 2 Score: 61.2326 bits (147), Expect = 2.249e-94
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1

Query:  721 PTGITKDPDQFALLKVKEIKNGRTAMFAMLGFFLQLMSQVKAQLKTLLK 867
            P G+ KDP+Q ALLKVKEIKNGR AMFAMLGFF+Q     +  ++ L K
Sbjct:  208 PLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAK 256

[Close]

BLAST of EY702945 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.519e-36
Identity = 60/136 (44.12%), Postives = 81/136 (59.56%), Query Frame = 2

Query:  281 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVSGAEYYRITNG 679
            ++YGPDR  FL  G    ++ PEYLTGE PGDYG+D  GLS  P  F++Y+  ELIHARWA+LGA G + PE  +++      E VWFK GA +     LNY G    I   +++  +  ++VL+  AE YR   G
Sbjct:   32 EFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGG 165

HSP 2 Score: 55.8398 bits (133), Expect = 3.519e-36
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 1

Query:  721 PTGITKDPDQFALLKVKEIKNGRTAMFAMLGFFLQLMSQVKAQLKTL 861
            P G+  DPD FA LKVKEIKNGR AMF+ LGFF+Q +   K  ++ L
Sbjct:  184 PLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNL 230

[Close]

BLAST of EY702945 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.437e-35
Identity = 60/135 (44.44%), Postives = 79/135 (58.52%), Query Frame = 2

Query:  284 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVSGAEYYRITNG 679
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P++F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G    +    + A+ A +++L+   E YRI  G
Sbjct:   58 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG 188

HSP 2 Score: 57.3806 bits (137), Expect = 6.437e-35
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1

Query:  703 PRWSI*PTGITKDPDQFALLKVKEIKNGRTAMFAMLGFFLQLMSQVKAQLKTL 861
            P  S  P G+ +DP+ FA LKVKEIKNGR AMF+M GFF+Q +   K  ++ L
Sbjct:  199 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 251

[Close]

BLAST of EY702945 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.093e-34
Identity = 60/135 (44.44%), Postives = 78/135 (57.78%), Query Frame = 2

Query:  284 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVSGAEYYRITNG 679
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+   E YR+  G
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 180

HSP 2 Score: 57.3806 bits (137), Expect = 1.093e-34
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 1

Query:  703 PRWSI*PTGITKDPDQFALLKVKEIKNGRTAMFAMLGFFLQLMSQVKAQLKTL 861
            P  S  P G+  DP+ FA LKVKEIKNGR AMF+M GFF+Q +   K  L+ L
Sbjct:  191 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 243

[Close]

BLAST of EY702945 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.422e-34
Identity = 60/135 (44.44%), Postives = 80/135 (59.26%), Query Frame = 2

Query:  284 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVSGAEYYRITNG 679
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G  + I    + A+ A +++L+   E YR+  G
Sbjct:   62 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGG 192

HSP 2 Score: 56.9954 bits (136), Expect = 1.422e-34
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 1

Query:  721 PTGITKDPDQFALLKVKEIKNGRTAMFAMLGFFLQLMSQVKAQLKTL 861
            P G+  DPD FA LKVKEIKNGR AMF+M GFF+Q +   K  ++ L
Sbjct:  209 PLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 255

[Close]

BLAST of EY702945 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.853e-34
Identity = 60/135 (44.44%), Postives = 79/135 (58.52%), Query Frame = 2

Query:  284 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVSGAEYYRITNG 679
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+   E YRI  G
Sbjct:   53 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 183

HSP 2 Score: 56.6102 bits (135), Expect = 1.853e-34
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1

Query:  703 PRWSI*PTGITKDPDQFALLKVKEIKNGRTAMFAMLGFFLQLMSQVKAQLKTL 861
            P  S  P G+  DP+ FA LKVKE+KNGR AMF+M GFF+Q +   K  L+ L
Sbjct:  194 PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 246

[Close]

BLAST of EY702945 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.854e-34
Identity = 60/135 (44.44%), Postives = 79/135 (58.52%), Query Frame = 2

Query:  284 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVSGAEYYRITNG 679
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+   E YRI  G
Sbjct:   52 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 182

HSP 2 Score: 56.6102 bits (135), Expect = 1.854e-34
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1

Query:  703 PRWSI*PTGITKDPDQFALLKVKEIKNGRTAMFAMLGFFLQLMSQVKAQLKTL 861
            P  S  P G+  DP+ FA LKVKE+KNGR AMF+M GFF+Q +   K  L+ L
Sbjct:  193 PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 245

[Close]

BLAST of EY702945 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.854e-34
Identity = 60/135 (44.44%), Postives = 77/135 (57.04%), Query Frame = 2

Query:  284 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVSGAEYYRITNG 679
            WYGPDR  +L        E P YLTGE P DYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVWFK GA +     L+Y G    +    + A+ A ++VL+   E YR+  G
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGG 181

HSP 2 Score: 58.151 bits (139), Expect = 1.854e-34
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 1

Query:  703 PRWSI*PTGITKDPDQFALLKVKEIKNGRTAMFAMLGFFLQLMSQVKAQLKTL 861
            P  S  P G+ +DP+ FA LKVKEIKNGR AMF+M GFF+Q +   K  L+ L
Sbjct:  192 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244

[Close]

BLAST of EY702945 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.854e-34
Identity = 61/135 (45.19%), Postives = 79/135 (58.52%), Query Frame = 2

Query:  284 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVSGAEYYRITNG 679
            WYGPDR  +L        +IP YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+   E YR+  G
Sbjct:   49 WYGPDRPKYLGPF---SDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGG 179

HSP 2 Score: 56.9954 bits (136), Expect = 1.854e-34
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 1

Query:  721 PTGITKDPDQFALLKVKEIKNGRTAMFAMLGFFLQLMSQVKAQLKTL 861
            P G+  DPD FA LKVKEIKNGR AMF+M GFF+Q +   K  ++ L
Sbjct:  196 PLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242

[Close]

BLAST of EY702945 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.145e-34
Identity = 60/135 (44.44%), Postives = 77/135 (57.04%), Query Frame = 2

Query:  284 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVSGAEYYRITNG 679
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+   E YRI  G
Sbjct:   49 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 179

HSP 2 Score: 58.151 bits (139), Expect = 3.145e-34
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 1

Query:  703 PRWSI*PTGITKDPDQFALLKVKEIKNGRTAMFAMLGFFLQLMSQVKAQLKTL 861
            P  S  P G+ +DP+ FA LKVKEIKNGR AMF+M GFF+Q +   K  L+ L
Sbjct:  190 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242

The following BLAST results are available for this feature:

BLAST of EY702945 vs. ExPASy Swiss-Prot

BLAST of EY702945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67


Match Name	E-value	Identity	Description
CB26_ARATH	2.249e-94	74.87	Chlorophyll a-b binding protein CP26, chloroplasti...	[more]
CB2_DUNTE	3.519e-36	44.12	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB2B_PINSY	6.437e-35	44.44	Chlorophyll a-b binding protein type 2 member 1B, ...	[more]
CB24_PETSP	1.093e-34	44.44	Chlorophyll a-b binding protein 25, chloroplastic ...	[more]
CB2A_PINSY	1.422e-34	44.44	Chlorophyll a-b binding protein type 2 member 1A, ...	[more]
CB22_PEA	1.853e-34	44.44	Chlorophyll a-b binding protein AB80, chloroplasti...	[more]
CB28_PEA	1.854e-34	44.44	Chlorophyll a-b binding protein 8, chloroplastic O...	[more]
CB23_PETSP	1.854e-34	44.44	Chlorophyll a-b binding protein 22R, chloroplastic...	[more]
CB21_GOSHI	1.854e-34	45.19	Chlorophyll a-b binding protein 151, chloroplastic...	[more]
CB2B_SOLLC	3.145e-34	44.44	Chlorophyll a-b binding protein 1B, chloroplastic ...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-014-A09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY702945 ID=EY702945; Name=EY702945; organism=Citrus sinensis; type=EST; length=890bp
TGCTCAACCCACGCGTCCGCATTTCTNCTTCCCAAAAAGCAGCAGCAGCA
ACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCTCTCCCGCTGCCTCC
ATTGGAGCTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGT
TAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTG
CTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTC
GCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCG
AAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGT
ACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTCTC
AGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTCA
TGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCT
TTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGACT
GGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAGAACAT
CCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGTAAGTG
GTGCTGAATATTATAGAATCACCAACGGTTTGGATTTGGAGGACAAGCTT
CCCCCAGGTGGTCCATTTGACCCACTGGGATTACCAAAGATCCTGACCAA
TTTGCATTGCTAAAAGTGAAAGAGATCAAGAATGGAAGAACTGCCATGTT
TGCCATGCTGGGTTTCTTTCTCCAGCTTATGTCACAGGTGAAAGCCCAGT
TGAAAACCTTGCTAAAATCTCAGCGATCCTTTTCCAACAA