EY702889

Overview
NameEY702889
Unique NameEY702889
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length980
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY702889 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.274e-12
Identity = 40/96 (41.67%), Postives = 54/96 (56.25%), Query Frame = 2 
Query:  359 DDDSSVEEPRSRARP-----CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 631
            +++  +EE   R          LYV NLP S   S+L E+F   GTV +VE+  +  T  SRG  ++TMGS+  AK AI   DGS VGGR ++V F
Sbjct:   94 EEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNF 189

HSP 2 Score: 22.7126 bits (47), Expect = 4.274e-12
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = 3 
Query:  708 SPP*IFVGNLSWAVKPEDL 764
            SP  ++V NLSWA+  + L
Sbjct:  215 SPHKLYVANLSWALTSQGL 233
The following BLAST results are available for this feature:
BLAST of EY702889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ROC5_NICSY4.274e-1241.6733 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-013-D10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702889 ID=EY702889; Name=EY702889; organism=Citrus sinensis; type=EST; length=980bp
GGNNGGGGGGCGGGGGGGCNNNNCCCCCAATTNNNAAANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACGCGTCCGAACGCTCATTC
TTCTCAATGGCTGCCGCTACGGGCTTCTTAACAACTTCTTCCTCTCTGTT
CACAAAAATTACTCCTCCAGCTACACCAAAACGATTCGGTTTTACCTCTC
TGCCAACTTTAATTAATTTCCAGTACCCAAAGCACTCATCTTGCTGGTCC
CGCTCTCACCCAGCTGGGTTTCGCTCAGTTCTTGCGGTGGTAGATGAGGA
AGCGGTAGTAGTTGAAGATGAGATTAACGGCAAGGATAATGTTGGTGGAA
ACGAAGTGGACGACGACAGTTCAGTCGAAGAGCCAAGGAGCCGCGCAAGG
CCCTGTGAGTTATACGTGTGTAACTTGCCCAGGAGCTTTGACATTTCAGA
GCTTCTTGAGATGTTCAAGCCTTTTGGAACCGTTCTTTCCGTTGAGGTTT
CGAGGAATCCCGAAACAGGCATAAGTCGAGGATGCGGTTACCTGACAATG
GGTTCGATCAATTCAGCAAAAAATGCAATTATTGCATTGGACGGATCTGA
TGTGGGTGGACGTGAAATGCGCGTGAGATTTTCATTTGATATGAATTCCC
GGACTAAGAATGCTGAGGCATTGATTTCTCCACCAAAGAAGATTTTTGTC
TATGAAAAGCCCTCCATAAATATTTGTCGGCAATCTTTCCTGGGCTGTAA
AACCTGAGGATTTAGAAATCATTTTGGCCGGTTAGGACTGTGGTCCGAGC
TTCATTGTTTCATAACGCACAGGAAAAACCACCCGAATTTTGGGGTTATT
TCCCTCTCTTTGACGCTCACAGAATGCTGCCTTTCTTTAAAGGGAACAGT
TTTGGGGGTGGCCATTATTTTTTAATAAGGTTTGTTACACCTGACTTCGG
ATGCCGTTTTTAACGTTCAAGGTGTATTGA
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