EY702888

Overview
NameEY702888
Unique NameEY702888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702888_ssr43 microsatellite EY702888_ssr43:43..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1966 contig Csv1_Contig1966:8..902. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702888 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 399.438 bits (1025), Expect = 1.404e-110
Identity = 196/232 (84.48%), Postives = 209/232 (90.09%), Query Frame = 2
Query:  161 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEGYNFTGEGGSALSMYNTDESIRAFAEASMNTAYQXEWPLYLSTKTLSLRR-*WKIQNIFQEV 853
            M F KIKV NPIVEMDGDEMTRV WKSIKDKLI PFLELDIKYFDLGLP+RDATDDKVTVESAEAT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+PGWTKPICIGRHAFGDQYRATDTVIQG GKLKLVFVPEG DEKTE E YNFTG GG ALSMYNTDES+R+FAEASMN AYQ +WPLYLSTK   L++   + ++IFQEV
Sbjct:    1 MTFDKIKVENPIVEMDGDEMTRVIWKSIKDKLICPFLELDIKYFDLGLPHRDATDDKVTVESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIQGAGKLKLVFVPEGTDEKTEFEVYNFTGAGGVALSMYNTDESVRSFAEASMNMAYQKKWPLYLSTKNTILKKYDGRFKDIFQEV 232          
BLAST of EY702888 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 396.356 bits (1017), Expect = 1.189e-109
Identity = 194/232 (83.62%), Postives = 209/232 (90.09%), Query Frame = 2
Query:  161 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEGYNFTGEGGSALSMYNTDESIRAFAEASMNTAYQXEWPLYLSTKTLSLRR-*WKIQNIFQEV 853
            MAFQKI V NPIVEMDGDEMTRV WKSIKDKLI PFLELDIKYF LGLP+RDATDDKVTVESAEAT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+PGWTKPICIGRHAFGDQYRATDTVI+G GKLKLVFVPEG DEKTE E YNFTG GG ALSMYNTDES+R+FAEASMN A+Q +WPLYLSTK   L++   + ++IFQEV
Sbjct:    1 MAFQKITVQNPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYFSLGLPHRDATDDKVTVESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGSDEKTEFEVYNFTGAGGVALSMYNTDESVRSFAEASMNMAFQKKWPLYLSTKNTILKKYDGRFKDIFQEV 232          
BLAST of EY702888 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 392.889 bits (1008), Expect = 1.314e-108
Identity = 193/236 (81.78%), Postives = 211/236 (89.41%), Query Frame = 2
Query:  149 TKKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEGYNFTGEGGSALSMYNTDESIRAFAEASMNTAYQXEWPLYLSTKTLSLRR-*WKIQNIFQEV 853
            T   M FQKIKVANPIVEMDGDEMTR+ WK IKDKLIFPF+ELDIKYFDLGLP RD T+DKVTVESAEATLKYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPIICKN+PRLIPGWTKPICIGRHAFGDQYRATD+VI+GPGKLKLVFVPEG+ E T+LE YNFTGEGG AL+MYNTDESIR+FAEASM  A + +WPLYLSTK   L++   + ++IFQEV
Sbjct:   18 TTATMGFQKIKVANPIVEMDGDEMTRIIWKYIKDKLIFPFVELDIKYFDLGLPYRDETNDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVFREPIICKNIPRLIPGWTKPICIGRHAFGDQYRATDSVIKGPGKLKLVFVPEGQGETTDLEVYNFTGEGGVALAMYNTDESIRSFAEASMAVALEKKWPLYLSTKNTILKKYDGRFKDIFQEV 253          
BLAST of EY702888 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 388.652 bits (997), Expect = 2.479e-107
Identity = 190/231 (82.25%), Postives = 209/231 (90.48%), Query Frame = 2
Query:  164 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEGYNFTGEGGSALSMYNTDESIRAFAEASMNTAYQXEWPLYLSTKTLSLRR-*WKIQNIFQEV 853
            AFQKIKVANPIVEMDGDEMTRV WKSIKDKLI PFLELDIKY+DLGLP RD TDDKVT+ESAEATLKYNVAIKCATITPDEARVKEF LK MWKSPNGTIRNILNGTVFREPI+CKN+PRL+PGWTK ICIGRHAFGDQYRATDTVI+G GKLKLVFVPEG+ E+TE E +NFTGEGG +L+MYNTDESIR+FAEASM TA + +WPLYLSTK   L++   + ++IFQEV
Sbjct:    3 AFQKIKVANPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYYDLGLPYRDETDDKVTIESAEATLKYNVAIKCATITPDEARVKEFGLKSMWKSPNGTIRNILNGTVFREPILCKNIPRLVPGWTKAICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGQGEETEFEVFNFTGEGGVSLAMYNTDESIRSFAEASMATALEKKWPLYLSTKNTILKKYDGRFKDIFQEV 233          
BLAST of EY702888 vs. ExPASy Swiss-Prot
Match: IDHP_MACFA (Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 4.708e-82
Identity = 148/236 (62.71%), Postives = 181/236 (76.69%), Query Frame = 2
Query:  149 TKKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEGYNFTGEGGSALSMYNTDESIRAFAEASMNTAYQXEWPLYLSTKTLSLRR-*WKIQNIFQEV 853
            T++  A ++IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD TDD+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V    G  K+VF P+      E E YNF   GG  + MYNTDESI  FA +    A Q +WPLY+STK   L+    + ++IFQE+
Sbjct:   35 TRRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDIQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEI 269          
BLAST of EY702888 vs. ExPASy Swiss-Prot
Match: IDHP_PIG (Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 1.049e-81
Identity = 146/234 (62.39%), Postives = 181/234 (77.35%), Query Frame = 2
Query:  164 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEGYNFTGEGGSALSMYNTDESIRAFAEASMNTAYQXEWPLYLSTKTLSLRR-*WKIQNIFQEVMKQ 862
            A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      + E YNF   GG  + MYNTDESI  FA +    A Q +WPLY+STK   L+    + ++IFQE+ ++
Sbjct:    9 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEK 241          
BLAST of EY702888 vs. ExPASy Swiss-Prot
Match: IDHP_HUMAN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 1.789e-81
Identity = 147/235 (62.55%), Postives = 180/235 (76.60%), Query Frame = 2
Query:  152 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEGYNFTGEGGSALSMYNTDESIRAFAEASMNTAYQXEWPLYLSTKTLSLRR-*WKIQNIFQEV 853
            ++  A ++IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD TDD+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V    G  K+VF P+      E E YNF   GG  + MYNTDESI  FA +    A Q +WPLY+STK   L+    + ++IFQE+
Sbjct:   36 RRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDIQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEI 269          
BLAST of EY702888 vs. ExPASy Swiss-Prot
Match: IDHP_MOUSE (Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3)

HSP 1 Score: 301.597 bits (771), Expect = 3.985e-81
Identity = 146/235 (62.13%), Postives = 180/235 (76.60%), Query Frame = 2
Query:  152 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEGYNFTGEGGSALSMYNTDESIRAFAEASMNTAYQXEWPLYLSTKTLSLRR-*WKIQNIFQEV 853
            ++  A ++IKV  P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  KLVF P+      E E YNF   GG  + MYNTDESI  FA +    + Q +WPLYLSTK   L+    + ++IFQE+
Sbjct:   36 RRHYAEKRIKVEKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKLVFTPKDGSSAKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYSIQKKWPLYLSTKNTILKAYDGRFKDIFQEI 269          
BLAST of EY702888 vs. ExPASy Swiss-Prot
Match: IDHP_RAT (Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2)

HSP 1 Score: 300.442 bits (768), Expect = 8.878e-81
Identity = 146/235 (62.13%), Postives = 180/235 (76.60%), Query Frame = 2
Query:  152 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEGYNFTGEGGSALSMYNTDESIRAFAEASMNTAYQXEWPLYLSTK-TLSLRR*WKIQNIFQEV 853
            ++  A ++IKV  P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  KLVF P+      E E YNF   GG  + MYNTDESI  FA +    + Q +WPLYLSTK T+      + ++IFQE+
Sbjct:   36 RRHYAEKRIKVEKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGMFKLVFTPKDGSGAKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYSIQKKWPLYLSTKNTIMKAYDGRFKDIFQEI 269          
BLAST of EY702888 vs. ExPASy Swiss-Prot
Match: IDHP_BOVIN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2)

HSP 1 Score: 300.442 bits (768), Expect = 8.878e-81
Identity = 145/238 (60.92%), Postives = 182/238 (76.47%), Query Frame = 2
Query:  152 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEGYNFTGEGGSALSMYNTDESIRAFAEASMNTAYQXEWPLYLSTKTLSLRR-*WKIQNIFQEVMKQ 862
            ++  A ++IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      E E YNF   GG  + MYNTDESI  FA +    A Q +WPLY+STK   L+    + ++IFQ + ++
Sbjct:   36 RRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKVVFTPKDGSGPKEWEVYNFPA-GGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQAIFEK 272          
The following BLAST results are available for this feature:
BLAST of EY702888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_TOBAC1.404e-11084.48Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOLTU1.189e-10983.62Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHP_MEDSA1.314e-10881.78Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_SOYBN2.479e-10782.25Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHP_MACFA4.708e-8262.71Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_PIG1.049e-8162.39Isocitrate dehydrogenase [NADP], mitochondrial (Fr... [more]
IDHP_HUMAN1.789e-8162.55Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_MOUSE3.985e-8162.13Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_RAT8.878e-8162.13Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_BOVIN8.878e-8160.92Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-013-D09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702888 ID=EY702888; Name=EY702888; organism=Citrus sinensis; type=EST; length=895bp
CCACGCGTCCGCTCGAAAGCAGAAGCATTTCAATTTTCATAGTATTATTA
TTATTATTGCTTCTTGCTGCTTCTTTTTGTCCACACGACCTCGGCACCTC
CGCTCTGACCCTATTATCTCTCTCTAGTTGTGAATCAACCGAAACTGAAC
AAAGAAGAAAATGGCTTTTCAGAAGATCAAGGTCGCCAATCCCATCGTCG
AAATGGACGGAGATGAAATGACTCGAGTTTTCTGGAAATCGATTAAGGAT
AAGCTTATTTTCCCTTTTCTGGAGTTGGACATAAAGTACTTCGACCTTGG
CCTTCCGAATCGTGATGCAACTGATGACAAAGTTACCGTTGAAAGTGCAG
AAGCCACTCTCAAGTACAATGTAGCGATCAAGTGTGCTACTATTACTCCA
GATGAAGCTCGTGTTAAGGAATTTGTCTTGAAACAGATGTGGAAGAGTCC
AAATGGGACAATCAGGAATATTTTGAATGGCACTGTTTTCAGAGAACCAA
TCATTTGCAAAAATGTCCCTCGGCTTATTCCAGGCTGGACAAAGCCCATA
TGCATTGGCAGGCATGCTTTTGGTGATCAATATCGAGCAACTGATACAGT
TATTCAAGGACCTGGCAAACTTAAATTGGTGTTTGTACCAGAGGGAAAAG
ATGAGAAGACAGAGTTAGAGGGTTACAACTTTACGGGTGAGGGTGGGAGT
GCATTGTCCATGTATAACACTGATGAGTCCATTCGAGCTTTTGCTGAGGC
TTCTATGAACACTGCCTATCAGAANGAGTGGCCACTCTATCTTAGTACAA
AAACACTATCCTTAAGAAGATGATGGAAGATCCAAAACATATTTCAGGAG
GTTATGAAGCAAACTTGAAGTCAAAGTTGAAGCTGCTGGCTATGG
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