EY684571

Overview
NameEY684571
Unique NameEY684571
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY684571 vs. ExPASy Swiss-Prot
Match: TRAC9_MAIZE (Putative AC9 transposase OS=Zea mays PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.756e-12
Identity = 35/85 (41.18%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:   52 ILNWWKVHTPRYPILSMMARDVLGTPMSTVVPESPFSTGGRLLDSCQSSLNPDTRQALICARDWLRIESTDELNPSSNHYSLPLY 306
            IL+WW+     YPIL+ +ARDVL   +STV  ES FS GGR++D  ++ L  +  +ALIC +DW+      E +   N   +P+Y
Sbjct:  656 ILSWWRGRVAEYPILTQIARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWVAASRKGEWHICYN--EVPIY 738
[Close]
BLAST of EY684571 vs. ExPASy Swiss-Prot
Match: TRA1_MAIZE (Putative AC transposase OS=Zea mays PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:   52 ILNWWKVHTPRYPILSMMARDVLGTPMSTVVPESPFSTGGRLLDSCQSSLNPDTRQALICARDWL 246
            IL+WW+     YPIL+ +ARDVL   +STV  ES FS GGR++D  ++ L  +  +ALIC +DW+
Sbjct:  687 ILSWWRGRVAEYPILTQIARDVLAIQVSTVASESAFSAGGRVVDPYRNRLGSEIVEALICTKDWV 751
The following BLAST results are available for this feature:
BLAST of EY684571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRAC9_MAIZE3.756e-1241.18Putative AC9 transposase OS=Zea mays PE=4 SV=1[more]
TRA1_MAIZE8.368e-1247.69Putative AC transposase OS=Zea mays PE=2 SV=2[more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-G01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684571 ID=EY684571; Name=EY684571; organism=Citrus sinensis; type=EST; length=738bp
TCCCGTGCCGACCCACGCGTCCGCGATCTTTCCTCGTAATTGTGAGTTCA
CATATTAAATTGGTGGAAAGTACACACACCGAGGTACCCTATATTGTCCA
TGATGGCTCGTGATGTTCTGGGAACTCCCATGTCAACTGTTGTTCCAGAA
TCACCATTTAGCACTGGAGGTAGATTGCTTGATAGCTGTCAAAGTTCACT
GAATCCTGATACTCGACAAGCCTTGATATGTGCACGAGACTGGTTGCGGA
TTGAATCTACTGATGAGCTTAATCCTTCCTCGAATCACTATTCTCTGCCC
CTTTACATTGAAGCAAATTAAGCTGAGAACGGTTCATGGATCTGCCATCA
GTTCATAAGATGGTGTCCAATGCTTTTCCAACACTTGGGCCTCACTCTCA
GAATCTGCTGCAGATTTAATTTACTTTGTTAGATGTACTGCATGTTTTAG
ATCTGCATTGGCGTGAGTGAGAACAGAGGCAACAGTTGCTGACTGCATAC
ACATCACCTACGACAAACTTACAATGAACCTCCCGCTCCTACAGCGGCAT
CTTCGCCACCGCAGTGGAGCCACCCCGGGCCAATGGAGGAACTCCCGCCC
CGCCCCCCAACACTCTCTGCCGAGGGGCGAGCCCAGCATCGCCGCGACTG
GGACCGCGAGTGGCAGCCCGGCCCCTCGCATGACACCCCACGCGGCAAGA
GAAGCACGGCGCGCGCCAGCCCCCAACGGAACTGACAC
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