EY649565

Overview
NameEY649565
Unique NameEY649565
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6923 contig Csv1_Contig6923:1..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY649565 vs. ExPASy Swiss-Prot
Match: Y1342_ARATH (PHD finger protein At1g33420 OS=Arabidopsis thaliana GN=At1g33420 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.475e-32
Identity = 93/223 (41.70%), Postives = 122/223 (54.71%), Query Frame = 1 
Query:  199 GRPLKRMKR--RVTADLNDFLTFPSTDGSGSAPTAP-FRTSIRSFLANHA-LMXXXXXXXXXXXTWQILFRVADATDGSDSTTPLTVCLDVVEEDVARS-RSVYCDQCRVVGWSGNPVSSKRYHFIVKADGNSIGGYNKPCTCCGDALHLSE-SRCKTCNHVTTTDDXXGLGVPPVRGYYSSFTWSGSCEWLWPSS*GQWXXRWI*GPLQCHIMDFWDRLCKS 849
            GR  KR +R  R++ADL DF TFP+ + +G + T P FR  +R+FLA HA +            TWQI+ R  D+TDGSD ++ L V LDVVEEDV RS RSVYC+ C VVGWS +PV  KRY FI+++     GG  K CT CG+  +LSE S CK C+     ++     +            S     L   +  +    ++ G     IMDFWDRLC S
Sbjct:    7 GRATKRARRSNRISADLYDFSTFPTAEINGESTTLPPFRDGVRTFLATHARVTFPPSTLFSSLMTWQIMLRPGDSTDGSDLSSKL-VSLDVVEEDVTRSSRSVYCEHCCVVGWSSHPVCRKRYRFIIRS-----GGDTKACTRCGNTQNLSEGSNCKWCSMALDIENWVYSQLEDNTHLLHGVIHSNGYAHLLCLNGREGGSGFLTGRA---IMDFWDRLCSS 220
The following BLAST results are available for this feature:
BLAST of EY649565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1342_ARATH2.475e-3241.70PHD finger protein At1g33420 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-001-A09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649565 ID=EY649565; Name=EY649565; organism=Citrus sinensis; type=EST; length=866bp
CCACGCGTCCGGACCAAACATACAACCCTACACAATCTCATCAAACGTTC
CTTTTTATTTTCCCTCTCAAAACACAAGCCCAAACCGAAAAGACCACACA
CTACACAGAATCGCATCACATACAAATCTCGCTTTCTCTAATCTACACCG
TGCGATCAACTATCCCTCTGTTTCCAGATCCAAGATATGGTTGTGAACGG
CAGGCCATTGAAGCGGATGAAGCGAAGAGTCACCGCGGATCTTAACGACT
TCCTTACTTTTCCTTCTACCGACGGTTCTGGATCTGCTCCAACGGCGCCG
TTTAGGACTAGTATTAGATCTTTTTTGGCTAATCACGCGTTGATGCCGCC
ACCCTCCTCCCTGTTACCCCACCTTCTTACGTGGCAGATACTGTTCCGAG
TCGCTGACGCAACGGACGGTTCTGATTCCACGACCCCGCTCACTGTGTGT
TTGGACGTGGTGGAGGAAGACGTCGCCAGATCCAGATCTGTATACTGCGA
TCAGTGCCGAGTTGTTGGTTGGAGTGGCAATCCTGTAAGCAGTAAACGCT
ACCATTTCATTGTCAAGGCTGATGGTAATTCCATTGGTGGGTATAACAAA
CCATGTACGTGCTGTGGGGATGCCCTGCATTTGTCAGAATCCAGGTGCAA
GACATGCAACCATGTGACGACNACGGATGATNGTGANGGATTGGGTGTAC
CACCAGTTAGAGGATACTACTCATCTTTTACATGGAGTGGTTCATGCGAA
TGGTTATGGCCATCTTCTTAGGGTCAATGGCANANAAGGTGGATCTAGGG
TCCNTTGCAGTGTCATATCATGGACTTTTGGGATCGGTTATGTAAAAGCT
CTGGATCAAAAGGTTA
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