EY649559

Overview
NameEY649559
Unique NameEY649559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length939
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY649559_ssr113 microsatellite EY649559_ssr113:113..122. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY649559 vs. ExPASy Swiss-Prot
Match: MSI4_ARATH (WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3)

HSP 1 Score: 381.333 bits (978), Expect = 4.222e-105
Identity = 202/303 (66.67%), Postives = 219/303 (72.28%), Query Frame = 3
Query:   30 SVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVL*AADSHPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSXQDHVSALAAEPGSAKS--TASGGANSKKCXRVVGMGDNLXRALLWGTM*IPRX*RHX*RRSV-----LSHQVHRVLXCR**FXPILWDGRSGSTSAVKFEKXIML-IFMG*WNPHD 914
            SVD++Y+QWK LVP+LYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKK+KTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVE QPNRHAVL AA+S PDLILTGHQDNAEFALAMCPTEP+VLSGGKDKSVVLWS QDH++ +  +  S+ S    +G    K     VG                PR   H    +V                      ILWD R+G+    K EK     +    WNPHD
Sbjct:   63 SVDEKYSQWKGLVPILYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVETQPNRHAVLGAANSRPDLILTGHQDNAEFALAMCPTEPFVLSGGKDKSVVLWSIQDHITTIGTDSKSSGSIIKQTGEGTDKNESPTVG----------------PRGVYHGHEDTVEDVAFSPTSAQEFCSVGDDSCLILWDARTGTNPVTKVEKAHDADLHCVDWNPHD 349          
BLAST of EY649559 vs. ExPASy Swiss-Prot
Match: MSI5_ARATH (WD-40 repeat-containing protein MSI5 OS=Arabidopsis thaliana GN=MSI5 PE=2 SV=2)

HSP 1 Score: 301.212 bits (770), Expect = 1.488e-89
Identity = 149/217 (68.66%), Postives = 174/217 (80.18%), Query Frame = 3
Query:   12 RKGMERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVL*AADSHPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSXQDHVSALAAE---PGSA-KSTASG 650
            ++  + +VDD Y+QWK+L+P+LYD   NH LVWPSLSCRWGPQLEQA  K  QRLYLSEQT+GSVPNTLVIANCE V           Q NE+A SPFVKK+KTIIHPGEVNRIRELPQNSKIVATHTDSPD+LIW+ E QP+R+AVL A DS PDL+L GHQD+AEFALAMCPTEP+VLSGGKDKSV+LW+ QDH++   ++   PGS+ K T  G
Sbjct:   47 QQSQKATVDDTYSQWKTLLPILYDSFVNHTLVWPSLSCRWGPQLEQAGSKT-QRLYLSEQTNGSVPNTLVIANCETVN---------RQLNEKAHSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDILIWNTETQPDRYAVLGAPDSRPDLLLIGHQDDAEFALAMCPTEPFVLSGGKDKSVILWNIQDHITMAGSDSKSPGSSFKQTGEG 253          

HSP 2 Score: 48.521 bits (114), Expect = 1.488e-89
Identity = 22/38 (57.89%), Postives = 23/38 (60.53%), Query Frame = 1
Query:  709 PFFGARCKYLGHEDTXEDVQXCPIKCTEXCXVGDDSCL 822
            P  G R  Y GH+DT EDV  CP    E C VGDDSCL
Sbjct:  260 PSVGPRGIYNGHKDTVEDVAFCPSSAQEFCSVGDDSCL 297          
BLAST of EY649559 vs. ExPASy Swiss-Prot
Match: MSI1_SOLLC (WD-40 repeat-containing protein MSI1 OS=Solanum lycopersicum GN=MSI1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.590e-19
Identity = 65/198 (32.83%), Postives = 100/198 (50.51%), Query Frame = 3
Query:   24 ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPF---------VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVL*AADSHPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW 584
            ER +++ Y  WK   P LYD +  H L WPSL+  W P  E+ + K+   Q++ L   T  + PN L++A    V+  +  AE+ ++  ++ RS F         V+  + I H GEVNR R +PQN  I+AT T S +V ++D    P++  +  A   +PDL L GH             + ++LSG  D  + LW
Sbjct:   14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKDYSVQKMILGTHTSENEPNYLMLAQ---VQLPLEDAENDARHYDDDRSEFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGAC--NPDLRLRGHSTEGYGLSWSQFKQGHLLSGSDDSHICLW 206          
BLAST of EY649559 vs. ExPASy Swiss-Prot
Match: MSI1_ARATH (WD-40 repeat-containing protein MSI1 OS=Arabidopsis thaliana GN=MSI1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.628e-19
Identity = 65/198 (32.83%), Postives = 98/198 (49.49%), Query Frame = 3
Query:   24 ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPF---------VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVL*AADSHPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW 584
            ER +++ Y  WK   P LYD +  H L WPSL+  W P  E+ + K+   Q++ L   T  S PN L++A  +V  P         Q++++ RS F         V+  + I H GEVNR R +PQN  I+AT T + +V ++D    P++  +  A   +PDL L GH             + ++LSG  D  + LW
Sbjct:   14 ERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKDYSVQKMILGTHTSESEPNYLMLA--QVQLPLDDTESEARQYDDD-RSEFGGFGCATGKVQIIQQINHDGEVNRARYMPQNPFIIATKTVNAEVYVFDYSKHPSKPPLDGAC--NPDLKLRGHSSEGYGLSWSKFKQGHLLSGSDDAQICLW 206          
BLAST of EY649559 vs. ExPASy Swiss-Prot
Match: MSI2_ARATH (WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana GN=MSI2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.346e-18
Identity = 73/241 (30.29%), Postives = 111/241 (46.06%), Query Frame = 3
Query:   33 VDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQA----TYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVL*AADSHPDLILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLW----SXQDHV-SALAAEPGSAKSTASGGANSKKCXRVVGMGDNLXRALLWGT 725
            V++ ++ WK   P LYD L +H L WPSL+  W P         +Y    +L L   T GS  + L++A  +VV P   A   I   N++   P V+  + I   GEVNR R +PQ   +V   T   +V ++D      +      ++  PDL L GH D   + L+  P  E Y+LSG +D+ + LW    + QD V +A+    G   + A    + K    + G      R ++W T
Sbjct:   14 VEEDFSVWKKNTPFLYDLLISHPLEWPSLTVHWVPSTPNPYVADSYFGVHKLILGTHTSGSAQDFLMVA--DVVTPTPNAEPGIGGANQDPFIPKVEIRQRIRVDGEVNRARCMPQKPTLVGAKTSGCEVFLFDYAKHAAKSQ---TSECDPDLRLVGH-DKEGYGLSWSPFKEGYLLSGSQDQKICLWDVSATPQDKVLNAMFVYEGHESAIADVSWHMKN-ENLFGSAGEDGRLVIWDT 247          
BLAST of EY649559 vs. ExPASy Swiss-Prot
Match: RBBP7_DANRE (Histone-binding protein RBBP7 OS=Danio rerio GN=rbbp7 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.682e-18
Identity = 67/199 (33.67%), Postives = 96/199 (48.24%), Query Frame = 3
Query:   24 ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPF---------VKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVL*AADSHPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLW 584
            ER +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L   T     N LVIA+ ++  P   A    S ++ E  + F         ++    I H GEVNR R +PQN  I+AT T + DVL +D    P++     + D  PDL L GHQ    + L+  P     +LS   D ++ LW
Sbjct:   13 ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVNRPEGKDYVVHRLVLGTHTSDE-QNHLVIASAQI--PNDDAQFDASHYDSEKGAEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPTSDVLAFDYTKHPSKPDP--SGDCSPDLRLRGHQKEG-YGLSWNPNLSGNLLSASDDHTICLW 205          
BLAST of EY649559 vs. ExPASy Swiss-Prot
Match: RBBP4_MOUSE (Histone-binding protein RBBP4 OS=Mus musculus GN=Rbbp4 PE=1 SV=4)

HSP 1 Score: 91.6633 bits (226), Expect = 6.682e-18
Identity = 67/198 (33.84%), Postives = 99/198 (50.00%), Query Frame = 3
Query:   24 ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQ--RLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEE--------ARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVL*AADSHPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLW 584
            ER +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L   T     N LVIA+ ++  P   A    S ++ E        + S  ++    I H GEVNR R +PQN  I+AT T S DVL++D    P++     + + +PDL L GHQ    + L+  P    ++LS   D ++ LW
Sbjct:   14 ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDE-QNHLVIASVQL--PNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDP--SGECNPDLRLRGHQKEG-YGLSWNPNLSGHLLSASDDHTICLW 205          
BLAST of EY649559 vs. ExPASy Swiss-Prot
Match: RBBP4_HUMAN (Histone-binding protein RBBP4 OS=Homo sapiens GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 6.682e-18
Identity = 67/198 (33.84%), Postives = 99/198 (50.00%), Query Frame = 3
Query:   24 ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQ--RLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEE--------ARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVL*AADSHPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLW 584
            ER +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L   T     N LVIA+ ++  P   A    S ++ E        + S  ++    I H GEVNR R +PQN  I+AT T S DVL++D    P++     + + +PDL L GHQ    + L+  P    ++LS   D ++ LW
Sbjct:   14 ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDE-QNHLVIASVQL--PNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDP--SGECNPDLRLRGHQKEG-YGLSWNPNLSGHLLSASDDHTICLW 205          
BLAST of EY649559 vs. ExPASy Swiss-Prot
Match: RBBP4_CHICK (Histone-binding protein RBBP4 OS=Gallus gallus GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 6.682e-18
Identity = 67/198 (33.84%), Postives = 99/198 (50.00%), Query Frame = 3
Query:   24 ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQ--RLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEE--------ARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVL*AADSHPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLW 584
            ER +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L   T     N LVIA+ ++  P   A    S ++ E        + S  ++    I H GEVNR R +PQN  I+AT T S DVL++D    P++     + + +PDL L GHQ    + L+  P    ++LS   D ++ LW
Sbjct:   14 ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDE-QNHLVIASVQL--PNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDP--SGECNPDLRLRGHQKEG-YGLSWNPNLSGHLLSASDDHTICLW 205          
BLAST of EY649559 vs. ExPASy Swiss-Prot
Match: RBBP4_BOVIN (Histone-binding protein RBBP4 OS=Bos taurus GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 6.682e-18
Identity = 67/198 (33.84%), Postives = 99/198 (50.00%), Query Frame = 3
Query:   24 ERSVDDRYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQ--RLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEE--------ARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVL*AADSHPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLW 584
            ER +++ Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L   T     N LVIA+ ++  P   A    S ++ E        + S  ++    I H GEVNR R +PQN  I+AT T S DVL++D    P++     + + +PDL L GHQ    + L+  P    ++LS   D ++ LW
Sbjct:   14 ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDE-QNHLVIASVQL--PNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDP--SGECNPDLRLRGHQKEG-YGLSWNPNLSGHLLSASDDHTICLW 205          
The following BLAST results are available for this feature:
BLAST of EY649559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
MSI4_ARATH4.222e-10566.67WD-40 repeat-containing protein MSI4 OS=Arabidopsi... [more]
MSI5_ARATH1.488e-8968.66WD-40 repeat-containing protein MSI5 OS=Arabidopsi... [more]
MSI1_SOLLC1.590e-1932.83WD-40 repeat-containing protein MSI1 OS=Solanum ly... [more]
MSI1_ARATH4.628e-1932.83WD-40 repeat-containing protein MSI1 OS=Arabidopsi... [more]
MSI2_ARATH1.346e-1830.29WD-40 repeat-containing protein MSI2 OS=Arabidopsi... [more]
RBBP7_DANRE6.682e-1833.67Histone-binding protein RBBP7 OS=Danio rerio GN=rb... [more]
RBBP4_MOUSE6.682e-1833.84Histone-binding protein RBBP4 OS=Mus musculus GN=R... [more]
RBBP4_HUMAN6.682e-1833.84Histone-binding protein RBBP4 OS=Homo sapiens GN=R... [more]
RBBP4_CHICK6.682e-1833.84Histone-binding protein RBBP4 OS=Gallus gallus GN=... [more]
RBBP4_BOVIN6.682e-1833.84Histone-binding protein RBBP4 OS=Bos taurus GN=RBB... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-001-A02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649559 ID=EY649559; Name=EY649559; organism=Citrus sinensis; type=EST; length=939bp
CCACGCGTCCGCGCAAAGGAATGGAAAGATCGGTTGATGATAGATACACA
CAATGGAAGTCCTTAGTTCCTGTGCTCTATGACTGGCTCGCCAATCACAA
CCTCGTTTGGCCCTCTCTCTCTTGCAGATGGGGTCCACAACTTGAGCAAG
CTACATACAAGAATCGCCAACGTCTTTACCTTTCTGAACAGACTGATGGC
AGTGTTCCAAATACTCTTGTAATAGCAAACTGTGAGGTTGTCAAGCCTCG
AGTTGCAGCTGCAGAGCACATATCACAGTTCAATGAAGAAGCACGCTCAC
CCTTTGTAAAGAAATTTAAAACAATCATACATCCTGGCGAGGTGAACAGA
ATAAGAGAACTCCCACAGAACAGTAAAATAGTAGCCACACACACTGATAG
TCCTGATGTCCTCATTTGGGATGTTGAGGCACAACCTAATCGCCATGCTG
TCTTATGAGCTGCTGATTCTCATCCAGATCTGATATTGACCGGCCATCAA
GATAATGCTGAATTTGCTCTGGCCATGTGTCCAACTGAACCCTATGTGCT
CTCTGGAGGCAAGGATAAGTCAGTGGTTTTATGGAGCATNCAAGACCATG
TCTCGGCTTTGGCAGCAGAACCAGGTTCTGCAAAATCTACAGCTTCTGGC
GGTGCCAACTCTAAAAAATGCTNCAGAGTGGTGGGAATGGGTGATAACCT
CTANAGAGCCCTTCTTTGGGGCACGATGTAAATACCTAGGNCATGAAGAC
ACTNGTGAAGACGTTCAGTNCTGTCCCATCAAGTGCACAGAGTNCTGCAN
TGTAGGTGATGATTCNTGCCTATACTATGGGATGGCAGATCTGGCTCTAC
TTCAGCTGTCAAGTTTGAAAAANCCATAATGCTGATATTCATGGGGTGAT
GGAATCCCCATGATGTGATCTAATAGGACGGGGGATTAT
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