EG358336

Overview
NameEG358336
Unique NameEG358336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA_AVESA (Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.896e-25
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.896e-25
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA5_MAIZE (Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.896e-25
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.896e-25
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA1_ORYSJ (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.896e-25
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.896e-25
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA2_ANEPH (Tubulin alpha-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.430e-24
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAPVISA KAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY
Sbjct:  176 VPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 228
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.414e-24
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAPVISA KAYHEQLSVPEITNAVFEP+SMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA_WHEAT (Tubulin alpha chain OS=Triticum aestivum GN=TUBA PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.687e-23
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAPVISAEKAYHEQLSV EITN+ FEPSSMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA_PRUDU (Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.687e-23
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAPVISAEKAYHEQLSV EITN+ FEPSSMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKY 312
The following BLAST results are available for this feature:
BLAST of EG358336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TBA_AVESA4.896e-25100.00Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 S... [more]
TBA6_MAIZE4.896e-25100.00Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV... [more]
TBA5_MAIZE4.896e-25100.00Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV... [more]
TBA3_ELEIN4.896e-25100.00Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 ... [more]
TBA1_ORYSJ4.896e-25100.00Tubulin alpha-1 chain OS=Oryza sativa subsp. japon... [more]
TBA1_HORVU4.896e-25100.00Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 ... [more]
TBA2_ANEPH2.430e-2498.11Tubulin alpha-2 chain (Fragment) OS=Anemia phyllit... [more]
TBA3_ARATH5.414e-2496.23Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thali... [more]
TBA_WHEAT2.687e-2394.34Tubulin alpha chain OS=Triticum aestivum GN=TUBA P... [more]
TBA_PRUDU2.687e-2394.34Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 ... [more]

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Properties
Property NameValue
Genbank description2c9 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0002c9, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358336 ID=EG358336; Name=EG358336; organism=Citrus sinensis; type=EST; length=495bp
TGTACCGTATCCTCGTATCCATTTCATGCTTTCATCATATGCCCCTGTCA
TCTCTGCTGAAAAAGCATACCATGAACAGCTTTCAGTTCCAGAGATCACA
AATGCAGTCTTTGAGCCCTCAAGCATGATGGCCAAATGTGACCCCAGGCA
CGGGAAGTACTCAAGACGAGCCAGTTGTCATGAACTCGCCGGATAACGGT
AATGGCAGCCAGCCACCACCAGCTCCTCCCCTCACTTCCAGAAATGATCC
TCATTTTCTTAGGAGATCTCAAAGGCAAACCCGCTCAAAGTATAGGAGTC
ATTCGCCAGCCACCCAAACCCCAACAGCCCCCAACGTCCGCAAACATAGA
CAATCAACTGCCAACCATCGAGCCACCATCACCTTCAAACCAAACCAAGT
CTTTATTACCATCTAGCCCGCAACGATCACAAGCCACACAAGACCAATCG
GGAGATGCACAACCAGCTGTCACAACCCTTATGCACCCCCCCCCG
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