EY702732

Overview
NameEY702732
Unique NameEY702732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702732_ssr37 microsatellite EY702732_ssr37:37..48. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.853e-85
Identity = 110/157 (70.06%), Postives = 121/157 (77.07%), Query Frame = 1 
Query:  100 IGVKEMLGNPLNVSSAVKTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGALLLDG 570
            +GV EMLG PLN  +  ++SAP AS+PSTFK VALF                   ++ELAKW GPDRRIFLPDGLLDRSEIPEYL GEV GDYGY PFGL KKP++F+KY A+ELIHARWAMLGAAGFIIPEA NK GANCGPEAVW KTGALLLDG
Sbjct:    4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDG 157

HSP 2 Score: 115.931 bits (289), Expect = 5.853e-85
Identity = 62/103 (60.19%), Postives = 72/103 (69.90%), Query Frame = 2 
Query:  590 RDIPINLVFAVIAETALVGGADYYRITNGSDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLAK-LSRMLLQNLL 895
            ++IPINLV AV+AE  L+GGA+YYRITNG D +D LHP GP  P  + K P    + K+KEIK GRLAMFAM G F QA   GEGP+ENLAK LS     NLL
Sbjct:  165 KNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 267
[Close]
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.314e-30
Identity = 47/95 (49.47%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:  289 GPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA-LLLDG 570
            GPDR  FL  G    ++ PEYLTGE PGDYG+   GLS  P  F++Y   ELIHARWA+LGA G + PE  ++       E VW K GA +  DG
Sbjct:   35 GPDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADG 127

HSP 2 Score: 64.3142 bits (155), Expect = 1.314e-30
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 2 
Query:  605 NLVFAVIAETALVGGADYYRITNGSD--LDDM--LHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENL 859
            +++  +  +  L+G A+ YR   GS+  LDD+  L+P GP  P  +   P      K+KEIK GRLAMF+  G F QA   G+GP++NL
Sbjct:  142 SIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNL 230
[Close]
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.393e-30
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR ++L        E P YLTGE PGDYG+   GLS  P++F+K    E+IH RWAMLGA G + PE   + G   G EAVW K GA
Sbjct:   58 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGA 144

HSP 2 Score: 63.929 bits (154), Expect = 6.393e-30
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 2 
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YRI  G   ++ D ++P G   P  + + P      K+KEIK GRLAMF+M G F QA   G+GPIENLA
Sbjct:  173 QVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 252
[Close]
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.114e-29
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR ++L        E P YLTGE PGDYG+   GLS  P+ F+K    E+IH+RWAMLGA G + PE   + G   G EAVW K GA
Sbjct:   62 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGA 148

HSP 2 Score: 62.003 bits (149), Expect = 3.114e-29
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = 2 
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YR+  G   ++ D ++P G   P  +   P      K+KEIK GRLAMF+M G F QA   G+GPIENLA
Sbjct:  177 QVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 256
[Close]
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.117e-29
Identity = 46/91 (50.55%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        E P YLTGE PGDYG+   GLS  P+ F+K    E+IH RWAMLGA G + PE F + G   G EAVW K G+
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGS 136

HSP 2 Score: 62.3882 bits (150), Expect = 3.117e-29
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = 2 
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YR+  G   ++ D L+P G   P  +   P      K+KEIK GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  165 QVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
[Close]
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.054e-29
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR ++L        E P YLTGE PGDYG+   GLS  P+ F+K    E+IH+RWAMLGA G + PE   + G   G EAVW K GA
Sbjct:   62 WYGPDRVMYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGA 148

HSP 2 Score: 62.003 bits (149), Expect = 4.054e-29
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = 2 
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YR+  G   ++ D ++P G   P  +   P      K+KEIK GRLAMF+M G F QA   G+GPIENLA
Sbjct:  177 QVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 256
[Close]
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.282e-29
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        E P YLTGE PGDYG+   GLS  P+ FSK    E+IH+RWAMLGA G + PE  ++ G   G EAVW K G+
Sbjct:   53 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGS 139

HSP 2 Score: 61.6178 bits (148), Expect = 5.282e-29
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = 2 
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YRI  G   ++ D L+P G   P  +   P      K+KE+K GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  168 QVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 247
[Close]
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.283e-29
Identity = 46/91 (50.55%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        E P YLTGE PGDYG+   GLS  P+ FSK    E+IH+RWAMLGA G + PE  ++ G   G EAVW K G+
Sbjct:   52 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGS 138

HSP 2 Score: 61.6178 bits (148), Expect = 5.283e-29
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = 2 
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YRI  G   ++ D L+P G   P  +   P      K+KE+K GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  167 QVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 246
[Close]
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.283e-29
Identity = 46/91 (50.55%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        E P YLTGE P DYG+   GLS  P+ F+K    E+IH RWAMLGA G + PE F + G   G EAVW K GA
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFG-EAVWFKAGA 137

HSP 2 Score: 63.1586 bits (152), Expect = 5.283e-29
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 2 
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YR+  G   ++ D L+P G   P  + + P      K+KEIK GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  166 QVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
[Close]
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.284e-29
Identity = 47/91 (51.65%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR ++L  G L   E P YLTGE PGDYG+   GLS  P+ F+K    E+IH+RWAMLGA G + PE   + G   G EAVW K G+
Sbjct:   49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGS 135

HSP 2 Score: 61.2326 bits (147), Expect = 5.284e-29
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 2 
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YR+  G   ++ D L+P G   P  +   P      K+KE+K GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  164 QVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
The following BLAST results are available for this feature:
BLAST of EY702732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB26_ARATH5.853e-8570.06Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_DUNTE1.314e-3049.47Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY6.393e-3050.55Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PINSY3.114e-2950.55Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB24_PETSP3.117e-2950.55Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB2A_PYRPY4.054e-2950.55Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB22_PEA5.282e-2950.55Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB28_PEA5.283e-2950.55Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PETSP5.283e-2950.55Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB29_MAIZE5.284e-2951.65Chlorophyll a-b binding protein M9, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-F04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702732 ID=EY702732; Name=EY702732; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGCCATTTCATTTCTCTAACACAAAGAAGCAGCAGCAGCAA
CACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCA
TTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTT
AAGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGC
TCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCG
CCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGGATGGTCCTGACCGA
AGAATTTTCTTGCCCGATGGTCTCTTGGACAGATCTGAGATCCCTGAGTA
CTTGACCGGAGAAGTTCCCGGAGACTATGGGTACTATCCTTTTGGTCTCA
GCAAGAAACCAGACGACTTCAGCAAATATCATGCATATGAATTGATTCAT
GCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTT
TAACAAGATTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGCTCAAGACTG
GAGCTCTACTTCTTGATGGAACACATTGAACTACTTCGGAGAGACATCCC
AATCAACCTTGTGTTTGCTGTCATTGCTGAGACTGCTCTTGTAGGTGGTG
CTGACTATTATAGAATCACCAACGGGTCGGATTTGGATGACATGCTTCAC
CCAGATGGTCCAATTTGACCCACTGTGATAATCAAAAGACCCTGACCAAT
TTGCATGGCTAAACTGAAGGAGATCAAGAAGGGAAGACTTGCAATGTTTG
CCATGACTGGTTGCTTTTCTCAAGCTAATGCCAAGGGGGAAGGCCCAATT
GAGAACCTTGCTAAACTTTCAAGGATGCTTTTGCAAAACCTGCTTTACCG
GATTTCCGAAAAGGAG
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