EY702707

Overview
NameEY702707
Unique NameEY702707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length958
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702707 vs. ExPASy Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe GN=pab2 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.039e-34
Identity = 77/141 (54.61%), Postives = 99/141 (70.21%), Query Frame = 1
Query:  181 KDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-CGQPKGFAYGEFVEIDAVQNALRVNETELHGRQLKVSAKRTNIPGMKQFRGR 600
            K+L +MK+R+ E+E EA  LR MQ +++ E         T A + +KE +D++S+YVGNVDY+ TPEE+Q HF SCG+VNRVTIL DK  G PKGFAY EF E   V NAL +N + LH R LKV+ KRTN+PGM + RGR
Sbjct:   12 KELLEMKERVAEMEAEAAKLRAMQEQLDNE---------TEALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGR 143          
BLAST of EY702707 vs. ExPASy Swiss-Prot
Match: PABP2_DROPS (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.299e-32
Identity = 73/153 (47.71%), Postives = 103/153 (67.32%), Query Frame = 1
Query:  184 DLEDMKKRLKEIEEEAGALREMQAKVEKEM--GAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKC-GQPKGFAYGEFVEIDAVQNALRVNETELHGRQLKVSAKRTNIPGMKQFRGRQPNPFGFRGQR 633
            +LE +K R+KE+EEEA  +++MQ++V+K+M  G+    ++   +  EK+E+D+RS+YVGNVDY  + EE++ HF  CGT+NRVTIL +K  G PKGFAY EF   + V+ AL +NET   GRQ+KV +KRTN PG+          F  RG R
Sbjct:   43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGAR 195          
BLAST of EY702707 vs. ExPASy Swiss-Prot
Match: PABP2_DROME (Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.299e-32
Identity = 73/153 (47.71%), Postives = 103/153 (67.32%), Query Frame = 1
Query:  184 DLEDMKKRLKEIEEEAGALREMQAKVEKEM--GAVQDSSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKC-GQPKGFAYGEFVEIDAVQNALRVNETELHGRQLKVSAKRTNIPGMKQFRGRQPNPFGFRGQR 633
            +LE +K R+KE+EEEA  +++MQ++V+K+M  G+    ++   +  EK+E+D+RS+YVGNVDY  + EE++ HF  CGT+NRVTIL +K  G PKGFAY EF   + V+ AL +NET   GRQ+KV +KRTN PG+          F  RG R
Sbjct:   43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGAR 195          
BLAST of EY702707 vs. ExPASy Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-A PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.345e-29
Identity = 69/137 (50.36%), Postives = 94/137 (68.61%), Query Frame = 1
Query:  184 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-CGQPKGFAYGEFVEIDAVQNALRVNETELHGRQLKVSAKRTNIPGM 582
            +LE +K R++E+EEEA  L+E+Q +VEK+M       +      +  EK E D+RSIYVGNVDY  T EE++ HF  CG+VNRVTIL DK  G PKGFAY EF + ++V+ +L ++E+   GRQ+KV  KRTN PG+
Sbjct:  109 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 245          
BLAST of EY702707 vs. ExPASy Swiss-Prot
Match: PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 1.756e-29
Identity = 69/137 (50.36%), Postives = 94/137 (68.61%), Query Frame = 1
Query:  184 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-CGQPKGFAYGEFVEIDAVQNALRVNETELHGRQLKVSAKRTNIPGM 582
            +LE +K R++E+EEEA  L+E+Q +VEK+M       +      +  EK E D+RSIYVGNVDY  T EE++ HF  CG+VNRVTIL DK  G PKGFAY EF + ++V+ +L ++E+   GRQ+KV  KRTN PG+
Sbjct:  114 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGI 250          
BLAST of EY702707 vs. ExPASy Swiss-Prot
Match: PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-B PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.756e-29
Identity = 69/137 (50.36%), Postives = 94/137 (68.61%), Query Frame = 1
Query:  184 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-CGQPKGFAYGEFVEIDAVQNALRVNETELHGRQLKVSAKRTNIPGM 582
            +LE +K R++E+EEEA  L+E+Q +VEK+M       +      +  EK E D+RSIYVGNVDY  T EE++ HF  CG+VNRVTIL DK  G PKGFAY EF + ++V+ +L ++E+   GRQ+KV  KRTN PG+
Sbjct:  108 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 244          
BLAST of EY702707 vs. ExPASy Swiss-Prot
Match: PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.294e-29
Identity = 69/137 (50.36%), Postives = 94/137 (68.61%), Query Frame = 1
Query:  184 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-CGQPKGFAYGEFVEIDAVQNALRVNETELHGRQLKVSAKRTNIPGM 582
            +LE +K R++E+EEEA  L+E+Q +VEK+M       +      +  EK E D+RSIYVGNVDY  T EE++ HF  CG+VNRVTIL DK  G PKGFAY EF + ++V+ +L ++E+   GRQ+KV  KRTN PG+
Sbjct:  109 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGI 245          
BLAST of EY702707 vs. ExPASy Swiss-Prot
Match: PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 2.294e-29
Identity = 69/137 (50.36%), Postives = 94/137 (68.61%), Query Frame = 1
Query:  184 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-CGQPKGFAYGEFVEIDAVQNALRVNETELHGRQLKVSAKRTNIPGM 582
            +LE +K R++E+EEEA  L+E+Q +VEK+M       +      +  EK E D+RSIYVGNVDY  T EE++ HF  CG+VNRVTIL DK  G PKGFAY EF + ++V+ +L ++E+   GRQ+KV  KRTN PG+
Sbjct:  118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGI 254          
BLAST of EY702707 vs. ExPASy Swiss-Prot
Match: PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 2.294e-29
Identity = 69/137 (50.36%), Postives = 94/137 (68.61%), Query Frame = 1
Query:  184 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSA---TQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-CGQPKGFAYGEFVEIDAVQNALRVNETELHGRQLKVSAKRTNIPGM 582
            +LE +K R++E+EEEA  L+E+Q +VEK+M       +      +  EK E D+RSIYVGNVDY  T EE++ HF  CG+VNRVTIL DK  G PKGFAY EF + ++V+ +L ++E+   GRQ+KV  KRTN PG+
Sbjct:  118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGI 254          
BLAST of EY702707 vs. ExPASy Swiss-Prot
Match: PABP2_DICDI (Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.110e-29
Identity = 69/158 (43.67%), Postives = 98/158 (62.03%), Query Frame = 1
Query:  184 DLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQD-------SSSTSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-CGQPKGFAYGEFVEIDAVQNALRVNETELHGRQLKVSAKRTNIPGMKQFRGRQPNPFGFRGQR 633
            +LE+MKKR +E+EEEA  L E+Q  +E  +                     ++EE+DSRS+YVGNVDY  T +++  +FQSCGTVNR+TIL+DK  G PKG  Y EFV  +++ NA+ +N++  + RQLK++ KRTN+P   +     P   GFRG R
Sbjct:   43 ELEEMKKRFREMEEEAKKLTELQNNLESNITGNNGVGIGGNIGGGGGLMNTDQEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGR 200          
The following BLAST results are available for this feature:
BLAST of EY702707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PAB2_SCHPO4.039e-3454.61Polyadenylate-binding protein 2 OS=Schizosaccharom... [more]
PABP2_DROPS1.299e-3247.71Polyadenylate-binding protein 2 OS=Drosophila pseu... [more]
PABP2_DROME1.299e-3247.71Polyadenylate-binding protein 2 OS=Drosophila mela... [more]
PAB2A_XENLA1.345e-2950.36Polyadenylate-binding protein 2-A OS=Xenopus laevi... [more]
PABP2_MOUSE1.756e-2950.36Polyadenylate-binding protein 2 OS=Mus musculus GN... [more]
PAB2B_XENLA1.756e-2950.36Polyadenylate-binding protein 2-B OS=Xenopus laevi... [more]
PABP2_XENTR2.294e-2950.36Polyadenylate-binding protein 2 OS=Xenopus tropica... [more]
PABP2_HUMAN2.294e-2950.36Polyadenylate-binding protein 2 OS=Homo sapiens GN... [more]
PABP2_BOVIN2.294e-2950.36Polyadenylate-binding protein 2 OS=Bos taurus GN=P... [more]
PABP2_DICDI5.110e-2943.67Polyadenylate-binding protein 2 OS=Dictyostelium d... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-C12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702707 ID=EY702707; Name=EY702707; organism=Citrus sinensis; type=EST; length=958bp
AGAAAAGGGGGGGGGGGGGGGGGGNNAGNNNNNNNNNNNNNNNNANNGNG
TAGGNNNACATCTATCGCATCCTTTACCCTATNCTCGGACTCTCTGGTCG
ACCCACGCGTCCGCGACCAAGACCACCAACACGAACACGATGCCGACAAT
GAAAATGAAGAAGACCCGAACGCTAACTCCAAGGACTTGGAGGATATGAA
GAAGAGGCTGAAGGAGATTGAAGAGGAAGCCGGCGCGCTCCGTGAAATGC
AGGCTAAAGTCGAGAAGGAGATGGGCGCCGTCCAAGATTCCTCGAGTACT
TCTGCAACTCAAGCTGAAAAGGAGGAGGTGGACTCCCGATCAATCTATGT
TGGCAATGTAGACTATGCATGCACTCCTGAGGAAGTGCAGCAGCATTTTC
AATCTTGTGGAACGGTTAACAGAGTGACGATTTTGACAGACAAGTGTGGT
CAACCAAAAGGATTTGCTTATGGTGAGTTTGTTGAAATTGATGCTGTTCA
GAATGCTCTTCGGGTAAATGAAACAGAGCTCCATGGTCGACAATTGAAGG
TCTCTGCTAAGCGAACCAACATTCCTGGAATGAAACAATTCCGAGGAAGG
CAACCCAACCCCTTTGGTTTCCGAGGCCAAAGGACATTCATTCCGGGCGG
TCCTGGTGGTCCATAAGAGAATGGGAAAGGAATAGAAAACTTTGGGAACT
TTTAAGGGACACATTAACCCTGTTCTGGTGATCGTGGCCGCGCACACCAT
CAACGCCTCCCTCCTACCCGGCAGAAAGCATTCGCATGCGGAAACTATTT
AATTATGGATGGGGTAACCGAGAAATACTCCTTACGAGGGAGACGATATC
TTGAAAAAAAAAAAAAAACTCCCCCCGAGGGGGCGGATTTAAGGAACCAC
CGGACTGACTCCGCTGGAAATCCTTAATACACCACGAGAAAAAGAATAGA
TATCATAA
back to top