EY702704

Overview
NameEY702704
Unique NameEY702704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: MRM1_DICDI (Mitochondrial rRNA methyltransferase OS=Dictyostelium discoideum GN=mrm1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.296e-25
Identity = 67/178 (37.64%), Postives = 99/178 (55.62%), Query Frame = 1
Query:   16 LWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSV-----SSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 534
            LW+ LDE+ DPQN+G IIR+  FF   GVV+  KNS+P++   SK+S+G+ E   +    ++  FL SS  NGW V+G S+     +   + +N+I   QPTIL+LG+EG GL+P V   C   ++I G                 GN+           ++SLNVSV +G+L+H L+
Sbjct:  374 LWLVLDELWDPQNVGAIIRNCSFFNIDGVVISNKNSSPITPAASKSSSGACESFVINRTESIEGFLKSSQRNGWNVVGTSLDDLNENQPCLDINQIKLDQPTILILGNEGFGLKPSVLEICNKTIKIVG-----------------GNY----------KIDSLNVSVTSGILIHTLL 524          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: MRM1_SCHPO (rRNA methyltransferase, mitochondrial OS=Schizosaccharomyces pombe GN=mrm1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.488e-24
Identity = 75/187 (40.11%), Postives = 101/187 (54.01%), Query Frame = 1
Query:    7 FPSLWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIP-----------PGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 534
            +P L+V +D +TDPQN+G +IRSAY  GA G++L  K++  LS VVSKASAG+LE+  + +  N M FL +S   GW+V+G   +  A+P N+               +P ILVLGSE  GLR  +   C+H V IPG                               V+SLNVSVAAG+LL+ LV
Sbjct:  145 YPPLYVYVDGITDPQNMGAVIRSAYILGAKGILLSKKHNTFLSPVVSKASAGALEVFNISHVKNPMVFLRNSVLKGWKVIG---TKPALPDNKDQIYTPHKIKTELMNEPKILVLGSE-KGLRTNILTQCSHYVSIPGGDKY---------------------------VDSLNVSVAAGILLYSLV 300          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: MRM1_HUMAN (rRNA methyltransferase 1, mitochondrial OS=Homo sapiens GN=MRM1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.393e-22
Identity = 67/182 (36.81%), Postives = 101/182 (55.49%), Query Frame = 1
Query:   16 LWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 531
            LW+ LD + DP+N G ++RSA+F G   V+   +NS PL+ VVSK+SAG++E++++   +++  FL + A+ GW V G  G  S++    +EIP          +PT+LVLG+EG+GL   V+ SC  L+ I                          + Q    +ESLNVSVAAG+LLH +
Sbjct:  146 LWLVLDGIQDPRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCPSTEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTI------------------------LPRRQLPPGLESLNVSVAAGILLHSI 303          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: MRM1_MOUSE (rRNA methyltransferase 1, mitochondrial OS=Mus musculus GN=Mrm1 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 7.644e-21
Identity = 70/185 (37.84%), Postives = 101/185 (54.59%), Query Frame = 1
Query:   16 LWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGG--------SVSSKAVPLN---EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 531
            LW+ L+ + DP+NLG ++RSA+F G   V+   +NS PL+ VVSKASAG++E++++    ++  FL + A+ GW V+G         S SSK VP+    E    +PT+LVLGSEG+GL   V  SC  L+ I    ++P                            +ESLNVSVA G+LLH +
Sbjct:  144 LWLVLEGLQDPRNLGAVMRSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATPDLPGFLQAKAQQGWLVVGTVGCPGPEISQSSK-VPITSCLEFVWDRPTLLVLGSEGSGLSQEVFASCQLLLTILPRRHLP--------------------------PGLESLNVSVATGILLHSI 301          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: Y479_MYCPA (Uncharacterized tRNA/rRNA methyltransferase MAP_0479 OS=Mycobacterium paratuberculosis GN=MAP_0479 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.057e-18
Identity = 59/171 (34.50%), Postives = 89/171 (52.05%), Query Frame = 1
Query:   10 PSLWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLL 522
            P+L VALD ++DP+NLG I+RS   FG  GV++  + SA ++ V  + SAG+   + +    N+ + L   A+ G RV+G       + L+++    P ++V+GSEG GL  LV ++C  +V IP        AG                     + ESLN SVAAGV+L
Sbjct:  159 PALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLQDWADRGLRVIGLDAGGDTM-LDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIP-------MAG---------------------SAESLNASVAAGVVL 300          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: Y574_MYCA1 (Uncharacterized tRNA/rRNA methyltransferase MAV_0574 OS=Mycobacterium avium (strain 104) GN=MAV_0574 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.911e-18
Identity = 59/171 (34.50%), Postives = 88/171 (51.46%), Query Frame = 1
Query:   10 PSLWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLL 522
            P+L VALD ++DP+NLG I+RS   FG  GV++  + SA ++ V  + SAG+   + +    N+ + L   A+ G RV+G         L+++    P ++V+GSEG GL  LV ++C  +V IP        AG                     + ESLN SVAAGV+L
Sbjct:  159 PALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLQDWADRGLRVIGLDAGGDTT-LDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIP-------MAG---------------------SAESLNASVAAGVVL 300          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: Y1447_MYCGI (Uncharacterized tRNA/rRNA methyltransferase Mflv_1447 OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_1447 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.033e-17
Identity = 62/171 (36.26%), Postives = 85/171 (49.71%), Query Frame = 1
Query:   10 PSLWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLL 522
            P+L VALD ++DP+NLG I+RS   FG  GVVL  + SA ++ V  + SAG+     +    N+ + L   A+ G +V+G         ++EI    PTI+V+GSEG GL  LV  +C  +V IP   P                             ESLN SVAAGV+L
Sbjct:  163 PALLVALDNISDPRNLGAIVRSVAAFGGHGVVLPQRRSASVTAVAWRTSAGAAARTPVARATNLNRTLKQYADAGLQVVGLDAGGDTT-IDEIDGLTPTIVVVGSEGKGLSRLVRENCDRIVSIPMAGP----------------------------TESLNASVAAGVVL 304          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: MRM1_YEAST (rRNA methyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=MRM1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.762e-17
Identity = 66/190 (34.74%), Postives = 97/190 (51.05%), Query Frame = 1
Query:    4 RFPSLWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAE-NGWRV----LGGSVSSKAV--------PLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 534
            +FP L + LDE+TDP N+G IIRSAYF G   +V+  +N +PL+ VVSK S+G+LEL+ + Y +  ++F   S E  GW      L  + S K           LN +    P +LV+G+E  G+R  ++      V IP         G I+     GN            V+SLNVSVA  +L+ +++
Sbjct:  239 KFP-LGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPLEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRTNLKMRSDFFVEIP--------FGGIE----KGNRAPEP------IVDSLNVSVATALLIDNIL 409          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: Y6073_MYCS2 (Uncharacterized tRNA/rRNA methyltransferase MSMEG_6073 OS=Mycobacterium smegmatis GN=MSMEG_6073 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.006e-17
Identity = 60/171 (35.09%), Postives = 85/171 (49.71%), Query Frame = 1
Query:   10 PSLWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLL 522
            P+L VALD ++DP+NLG I+RS   F   GVV+  + SA ++ V  + SAG+   V +    N+ + L S A+ G +++G         L+E+    PT++V+GSEG GL  LV   C  +V IP   P                             ESLN SVAAGV+L
Sbjct:  164 PALLVALDNISDPRNLGAIVRSVAAFAGHGVVIPQRRSASVTAVAWRTSAGAAARVPVARATNLNRTLKSFADAGLQIVGLDAGGDTT-LDELDATGPTVVVVGSEGKGLSRLVREHCDAIVSIPMAGP----------------------------TESLNASVAAGVVL 305          
BLAST of EY702704 vs. ExPASy Swiss-Prot
Match: Y5122_MYCSJ (Uncharacterized tRNA/rRNA methyltransferase Mjls_5122 OS=Mycobacterium sp. (strain JLS) GN=Mjls_5122 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.697e-17
Identity = 59/171 (34.50%), Postives = 86/171 (50.29%), Query Frame = 1
Query:   10 PSLWVALDEVTDPQNLGVIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELVELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDANGNHGSAEQFQSFMAVESLNVSVAAGVLL 522
            P+L VALD ++DP+NLG I+RS   FG  GV++  + SA ++ V  + SAG+   + +    N+ + L S A+ G +V+G         L+E+    P ++V+GSEG GL  LV  +C  +V IP   P                             ESLN SVAAGV+L
Sbjct:  164 PALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQVVGLDADGDTT-LDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIPMAGP----------------------------TESLNASVAAGVVL 305          
The following BLAST results are available for this feature:
BLAST of EY702704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
MRM1_DICDI2.296e-2537.64Mitochondrial rRNA methyltransferase OS=Dictyostel... [more]
MRM1_SCHPO1.488e-2440.11rRNA methyltransferase, mitochondrial OS=Schizosac... [more]
MRM1_HUMAN1.393e-2236.81rRNA methyltransferase 1, mitochondrial OS=Homo sa... [more]
MRM1_MOUSE7.644e-2137.84rRNA methyltransferase 1, mitochondrial OS=Mus mus... [more]
Y479_MYCPA6.057e-1834.50Uncharacterized tRNA/rRNA methyltransferase MAP_04... [more]
Y574_MYCA17.911e-1834.50Uncharacterized tRNA/rRNA methyltransferase MAV_05... [more]
Y1447_MYCGI1.033e-1736.26Uncharacterized tRNA/rRNA methyltransferase Mflv_1... [more]
MRM1_YEAST1.762e-1734.74rRNA methyltransferase, mitochondrial OS=Saccharom... [more]
Y6073_MYCS23.006e-1735.09Uncharacterized tRNA/rRNA methyltransferase MSMEG_... [more]
Y5122_MYCSJ6.697e-1734.50Uncharacterized tRNA/rRNA methyltransferase Mjls_5... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-C09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702704 ID=EY702704; Name=EY702704; organism=Citrus sinensis; type=EST; length=876bp
TGAAGATTCCCCTCTCTTTGGGTAGCACTGGATGAGGTGACAGATCCTCA
AAATTTGGGGGTCATCATTAGGTCTGCTTACTTCTTTGGAGCTTCAGGGG
TGGTTTTGTGTGCAAAAAATTCAGCACCATTGAGTGGTGTTGTGAGCAAG
GCTAGTGCAGGGTCACTTGAATTGGTGGAGCTGAGGTACTGTAACAATAT
GATGCAGTTCTTGGTATCATCAGCTGAAAATGGCTGGCGAGTCCTTGGCG
GTTCAGTTTCTTCAAAAGCAGTTCCCTTGAATGAGATTCCTCCTGGTCAG
CCAACTATTCTAGTTTTGGGCAGTGAGGGCACAGGATTGAGGCCTTTGGT
GGAGAGATCATGTACACATTTGGTTAGGATCCCTGGAAACATTCCAGTTG
ATGTAACTGCTGGAGAAATTGATGATGTGGATGCTAATGGAAATCATGGG
TCAGCAGAACAGTTCCAGTCATTTATGGCTGTGGAGAGCTTGAATGTCAG
TGTTGCTGCTGGTGTGCTGCTTCACCACTTAGTTGGGCACCAGGTCAGTA
ATAACAGCCACATAGAGGATAGTTCGACTGCAACAGTTGATTAAGCAGGG
TGAGCGGGGAAGAAAAGAATCACATTTTGTGGTTCATGCTGCTGGATGCA
AAAATTGGGCAGGGTCTAAAATGATTCACTGAGCTTTTGCAAATTGCGAC
GAAACAGGAGCTACATTCCTCAGGAAATGGCTAAGTCGTTTATTGAAAAC
GCAAGGAGAGCCCGGTTGGGACAACTTGGCAGTATGTCTCAAAGTTTTCA
CAGGCTGAAGGAAGCCCATTTCTTCAAACCTTCCCAAATCTTGGGGAAGG
GAAACAGTTGCTTCCTAAATTAATTC
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