EY702630
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY702630 vs. ExPASy Swiss-Prot
Match: RPAB1_RAT (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus GN=Polr2e PE=2 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 8.641e-54 Identity = 104/198 (52.53%), Postives = 144/198 (72.73%), Query Frame = 2 Query: 224 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPXCRYYGLKRGQVVKIIRPSETAG 802 +EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E+QLPRIQ DP RY+G+KRGQVVKIIRPSETAG Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAG 201
BLAST of EY702630 vs. ExPASy Swiss-Prot
Match: RPAB1_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus GN=Polr2e PE=2 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 8.641e-54 Identity = 104/198 (52.53%), Postives = 144/198 (72.73%), Query Frame = 2 Query: 224 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPXCRYYGLKRGQVVKIIRPSETAG 802 +EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E+QLPRIQ DP RY+G+KRGQVVKIIRPSETAG Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAG 201
BLAST of EY702630 vs. ExPASy Swiss-Prot
Match: RPAB1_PONAB (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii GN=POLR2E PE=2 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 1.129e-53 Identity = 104/198 (52.53%), Postives = 143/198 (72.22%), Query Frame = 2 Query: 224 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPXCRYYGLKRGQVVKIIRPSETAG 802 +EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E QLPRIQ DP RY+G+KRGQVVKIIRPSETAG Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAG 201
BLAST of EY702630 vs. ExPASy Swiss-Prot
Match: RPAB1_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens GN=POLR2E PE=1 SV=4) HSP 1 Score: 207.223 bits (526), Expect = 9.554e-53 Identity = 103/198 (52.02%), Postives = 142/198 (71.72%), Query Frame = 2 Query: 224 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPXCRYYGLKRGQVVKIIRPSETAG 802 +EE RL++IR+T+MQ+ DRGY V E++ + E+F A+ G+ +R DL + A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E QLPRIQ DP RY+G+KRGQVVKIIRPSETAG Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAG 201
BLAST of EY702630 vs. ExPASy Swiss-Prot
Match: RPAB1_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Bos taurus GN=POLR2E PE=2 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 2.128e-52 Identity = 103/198 (52.02%), Postives = 141/198 (71.21%), Query Frame = 2 Query: 224 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPXCRYYGLKRGQVVKIIRPSETAG 802 +EE RL++IR+T+MQ+ DRGY V ++ + E+F A+FG +R DL + A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F + ELL+NI EH LVPEH V+T EE LL RY ++E QLPRIQ DP RY+G+KRGQVVKIIRPSETAG Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAG 201
BLAST of EY702630 vs. ExPASy Swiss-Prot
Match: RPAB1_CAEEL (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans GN=H27M09.2 PE=2 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 1.056e-51 Identity = 104/202 (51.49%), Postives = 145/202 (71.78%), Query Frame = 2 Query: 218 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPXCRYYGLKRGQVVKIIRPSETAG 802 ++D+E++ RL+RIR+TV+QM+ DRGY V E++ E F ++G+ R DL I A +D +DQ++VFFP++ K+G+KT+K +M+ +N+ RAI+VVQ +TP A+ I +++ K+ LE F EAEL+VNI EH LVPEH V+T EEK LL RY +K++QLPRIQ DP RY+GL+RGQVVKIIRPSETAG Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAG 202
BLAST of EY702630 vs. ExPASy Swiss-Prot
Match: RPAB1_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc1 OS=Dictyostelium discoideum GN=polr2e PE=3 SV=2) HSP 1 Score: 196.052 bits (497), Expect = 2.203e-49 Identity = 105/194 (54.12%), Postives = 130/194 (67.01%), Query Frame = 2 Query: 227 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA--KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPXCRYYGLKRGQVVKIIRPSETAG 802 E+I RL +IR+TV+QML DR Y + +E +E F++ RE+L + ++D +D IYVFFPD KVGV +K Y + MK RAI+VVQQN+TPFA+ + E S K LE F EAELLVNI H LVP+H +LT EEK LL RY +KE+QLPRIQ DP RYYGL RG VVKI+RPSETAG Sbjct: 2 EDINRLLQIRKTVLQMLSDREYIITAYEQEYPRESFVS-------RENLTMYCVKKDDPTDSIYVFFPDTPKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHHQLVPKHILLTKEEKLELLTRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVRPSETAG 188
BLAST of EY702630 vs. ExPASy Swiss-Prot
Match: RPAB1_SCHPO (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Schizosaccharomyces pombe GN=rpb5 PE=1 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 1.211e-39 Identity = 87/201 (43.28%), Postives = 127/201 (63.18%), Query Frame = 2 Query: 212 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAK---FGENMKREDLVINKALRNDSSD-QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPXCRYYGLKRGQVVKIIRPSETAG 802 M+ ++ I R+FR +T Q++ DRGY V E++++ +QF A G N+ R L NDS+ IY+ F E VG+K M+T+ + + N IL+ ++TP A I ++ +F +E FQE++L+VNI H LVP+H +L+ +EKK LL RY ++ETQLPRIQ+ DP RY GLKRG+VVKI+R SET+G Sbjct: 1 MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLADPVARYLGLKRGEVVKIVRRSETSG 201
BLAST of EY702630 vs. ExPASy Swiss-Prot
Match: RPAB1_YEAST (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Saccharomyces cerevisiae GN=RPB5 PE=1 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 5.090e-38 Identity = 90/203 (44.33%), Postives = 123/203 (60.59%), Query Frame = 2 Query: 221 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQI---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPXCRYYGLKRGQVVKIIRPSETAG 802 ++ I RL+R RTV +M++DRGYF+ E+ + E F AK+ ++M R + N + + I +V F DE VGVKTMKT+ ++ +N I V Q N+TP A + I +E F EA L+VNI H LVP+H L+++EK+ LLKRY +KE+QLPRIQ DP Y GLKRG+VVKIIR SET+G Sbjct: 5 NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPPAT-IETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSG 206
BLAST of EY702630 vs. ExPASy Swiss-Prot
Match: RPAB1_CANGA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Candida glabrata GN=RPB5 PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 8.682e-38 Identity = 90/203 (44.33%), Postives = 120/203 (59.11%), Query Frame = 2 Query: 221 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ---------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPXCRYYGLKRGQVVKIIRPSETAG 802 +D I RL+R RTV +M+RDRGYF+ E++++ E F K+ ++M R + N + + ++V F DE VGVKTMKT+ ++ + I + Q N+TP A + I +E F EA L+VNI H LVP+H L EEK LLKRY +KE+QLPRIQ DP Y GLKRG+VVKIIR SETAG Sbjct: 5 NDRSISRLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANPTEESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMKLVPSIPPAT-IETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETAG 206 The following BLAST results are available for this feature:
BLAST of EY702630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY702630 ID=EY702630; Name=EY702630; organism=Citrus sinensis; type=EST; length=860bpback to top |