EY702630

Overview
NameEY702630
Unique NameEY702630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9989 contig Csv1_Contig9989:1..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702630 vs. ExPASy Swiss-Prot
Match: RPAB1_RAT (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus GN=Polr2e PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.641e-54
Identity = 104/198 (52.53%), Postives = 144/198 (72.73%), Query Frame = 2
Query:  224 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPXCRYYGLKRGQVVKIIRPSETAG 802
            +EE  RL++IR+T+MQ+  DRGY V   E++ + E+F A+FG+       +R DL +  A  +D +DQ++VFFP+E KVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ K+ LE F + ELL+NI EH LVPEH V+T EE   LL RY ++E+QLPRIQ  DP  RY+G+KRGQVVKIIRPSETAG
Sbjct:    4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAG 201          
BLAST of EY702630 vs. ExPASy Swiss-Prot
Match: RPAB1_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus GN=Polr2e PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.641e-54
Identity = 104/198 (52.53%), Postives = 144/198 (72.73%), Query Frame = 2
Query:  224 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPXCRYYGLKRGQVVKIIRPSETAG 802
            +EE  RL++IR+T+MQ+  DRGY V   E++ + E+F A+FG+       +R DL +  A  +D +DQ++VFFP+E KVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ K+ LE F + ELL+NI EH LVPEH V+T EE   LL RY ++E+QLPRIQ  DP  RY+G+KRGQVVKIIRPSETAG
Sbjct:    4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAG 201          
BLAST of EY702630 vs. ExPASy Swiss-Prot
Match: RPAB1_PONAB (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii GN=POLR2E PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.129e-53
Identity = 104/198 (52.53%), Postives = 143/198 (72.22%), Query Frame = 2
Query:  224 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPXCRYYGLKRGQVVKIIRPSETAG 802
            +EE  RL++IR+T+MQ+  DRGY V   E++ + E+F A+FG+       +R DL +  A  +D +DQ++VFFP+E KVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ K+ LE F + ELL+NI EH LVPEH V+T EE   LL RY ++E QLPRIQ  DP  RY+G+KRGQVVKIIRPSETAG
Sbjct:    4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAG 201          
BLAST of EY702630 vs. ExPASy Swiss-Prot
Match: RPAB1_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens GN=POLR2E PE=1 SV=4)

HSP 1 Score: 207.223 bits (526), Expect = 9.554e-53
Identity = 103/198 (52.02%), Postives = 142/198 (71.72%), Query Frame = 2
Query:  224 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPXCRYYGLKRGQVVKIIRPSETAG 802
            +EE  RL++IR+T+MQ+  DRGY V   E++ + E+F A+ G+       +R DL +  A  +D +DQ++VFFP+E KVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ K+ LE F + ELL+NI EH LVPEH V+T EE   LL RY ++E QLPRIQ  DP  RY+G+KRGQVVKIIRPSETAG
Sbjct:    4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAG 201          
BLAST of EY702630 vs. ExPASy Swiss-Prot
Match: RPAB1_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Bos taurus GN=POLR2E PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.128e-52
Identity = 103/198 (52.02%), Postives = 141/198 (71.21%), Query Frame = 2
Query:  224 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPXCRYYGLKRGQVVKIIRPSETAG 802
            +EE  RL++IR+T+MQ+  DRGY V    ++ + E+F A+FG        +R DL +  A  +D +DQ++VFFP+E KVG+KT+K Y  RM+ EN+ RA++VVQQ +TP A+  + +++ K+ LE F + ELL+NI EH LVPEH V+T EE   LL RY ++E QLPRIQ  DP  RY+G+KRGQVVKIIRPSETAG
Sbjct:    4 EEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAG 201          
BLAST of EY702630 vs. ExPASy Swiss-Prot
Match: RPAB1_CAEEL (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans GN=H27M09.2 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.056e-51
Identity = 104/202 (51.49%), Postives = 145/202 (71.78%), Query Frame = 2
Query:  218 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPXCRYYGLKRGQVVKIIRPSETAG 802
            ++D+E++  RL+RIR+TV+QM+ DRGY V   E++   E F  ++G+        R DL I  A  +D +DQ++VFFP++ K+G+KT+K    +M+ +N+ RAI+VVQ  +TP A+  I +++ K+ LE F EAEL+VNI EH LVPEH V+T EEK  LL RY +K++QLPRIQ  DP  RY+GL+RGQVVKIIRPSETAG
Sbjct:    1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAG 202          
BLAST of EY702630 vs. ExPASy Swiss-Prot
Match: RPAB1_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc1 OS=Dictyostelium discoideum GN=polr2e PE=3 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 2.203e-49
Identity = 105/194 (54.12%), Postives = 130/194 (67.01%), Query Frame = 2
Query:  227 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA--KFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPXCRYYGLKRGQVVKIIRPSETAG 802
            E+I RL +IR+TV+QML DR Y +  +E    +E F++       RE+L +    ++D +D IYVFFPD  KVGV  +K Y + MK     RAI+VVQQN+TPFA+  + E S   K  LE F EAELLVNI  H LVP+H +LT EEK  LL RY +KE+QLPRIQ  DP  RYYGL RG VVKI+RPSETAG
Sbjct:    2 EDINRLLQIRKTVLQMLSDREYIITAYEQEYPRESFVS-------RENLTMYCVKKDDPTDSIYVFFPDTPKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHHQLVPKHILLTKEEKLELLTRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVRPSETAG 188          
BLAST of EY702630 vs. ExPASy Swiss-Prot
Match: RPAB1_SCHPO (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Schizosaccharomyces pombe GN=rpb5 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.211e-39
Identity = 87/201 (43.28%), Postives = 127/201 (63.18%), Query Frame = 2
Query:  212 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAK---FGENMKREDLVINKALRNDSSD-QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPXCRYYGLKRGQVVKIIRPSETAG 802
            M+  ++ I R+FR  +T  Q++ DRGY V   E++++ +QF A     G N+ R  L       NDS+   IY+ F  E  VG+K M+T+ + +   N    IL+   ++TP A   I  ++ +F +E FQE++L+VNI  H LVP+H +L+ +EKK LL RY ++ETQLPRIQ+ DP  RY GLKRG+VVKI+R SET+G
Sbjct:    1 MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLADPVARYLGLKRGEVVKIVRRSETSG 201          
BLAST of EY702630 vs. ExPASy Swiss-Prot
Match: RPAB1_YEAST (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Saccharomyces cerevisiae GN=RPB5 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.090e-38
Identity = 90/203 (44.33%), Postives = 123/203 (60.59%), Query Frame = 2
Query:  221 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQI---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPXCRYYGLKRGQVVKIIRPSETAG 802
            ++  I RL+R  RTV +M++DRGYF+   E+ +  E F AK+ ++M R    +     N + + I         +V F DE  VGVKTMKT+   ++ +N    I V Q N+TP A   +  I     +E F EA L+VNI  H LVP+H  L+++EK+ LLKRY +KE+QLPRIQ  DP   Y GLKRG+VVKIIR SET+G
Sbjct:    5 NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPPAT-IETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSG 206          
BLAST of EY702630 vs. ExPASy Swiss-Prot
Match: RPAB1_CANGA (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Candida glabrata GN=RPB5 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.682e-38
Identity = 90/203 (44.33%), Postives = 120/203 (59.11%), Query Frame = 2
Query:  221 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ---------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPXCRYYGLKRGQVVKIIRPSETAG 802
            +D  I RL+R  RTV +M+RDRGYF+   E++++ E F  K+ ++M R    +     N + +          ++V F DE  VGVKTMKT+   ++ +     I + Q N+TP A   +  I     +E F EA L+VNI  H LVP+H  L  EEK  LLKRY +KE+QLPRIQ  DP   Y GLKRG+VVKIIR SETAG
Sbjct:    5 NDRSISRLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANPTEESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMKLVPSIPPAT-IETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETAG 206          
The following BLAST results are available for this feature:
BLAST of EY702630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RPAB1_RAT8.641e-5452.53DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_MOUSE8.641e-5452.53DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_PONAB1.129e-5352.53DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_HUMAN9.554e-5352.02DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_BOVIN2.128e-5252.02DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_CAEEL1.056e-5151.49DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_DICDI2.203e-4954.12DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_SCHPO1.211e-3943.28DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_YEAST5.090e-3844.33DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB1_CANGA8.682e-3844.33DNA-directed RNA polymerases I, II, and III subuni... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-010-C10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702630 ID=EY702630; Name=EY702630; organism=Citrus sinensis; type=EST; length=860bp
AGAAGTATCTTTCAATAATGAAAACAAAGAGCCCTAGTTGCAGTTGAACA
ACTTGAATCCAATCACACCACTCCACGGTCTCGTGTAGCCGTTTGTTGCC
GCTGCCAACGACCCGCTGCTGTCGCCGCCGCTGACCGTTTTCTTGAAACG
TACAAGTGGGTATTAGTTTTACTCAACAGCTTCGTGTCATCGGAAATTTA
AAGGATAAAACATGACTTTATCCGATGAAGAAATCAAAAGGCTATTCAGA
ATCCGGAGGACGGTCATGCAGATGCTCAGAGATAGGGGTTATTTTGTTGG
AGACTTTGAAATCAATATGAGCAAAGAACAGTTCATTGCTAAATTTGGTG
AGAACATGAAAAGGGAGGACCTTGTTATCAATAAAGCATTACGAAATGAT
AGCTCAGATCAGATCTATGTTTTCTTCCCTGATGAACAAAAAGTTGGGGT
TAAGACAATGAAGACTTATACTAATCGTATGAAATCGGAAAATGTTTTCC
GAGCAATATTGGTGGTTCAACAAAATTTGACTCCCTTTGCTCGAACATGC
ATACAAGAGATATCTGCAAAATTCCACTTGGAGGTATTCCAGGAGGCAGA
GCTTTTGGTCAACATCAAAGAACACGTTCTGGTTCCTGAGCATCAAGTGC
TTACAAATGAAGAGAAGAAGACTTTGCTGAAGCGGTATACAGTGAAGGAA
ACGCAGTTGCCACGTATTCAAGTGACTGATCCNNATTGCAGATATTATGG
GCTGAAGCGTGGACAGGTTGTGAAGATTATCCGGCCCAGTGAGACTGCTG
GTCGTTATGTCACCTATCGATATGTTGTATAAGTATACTCATAAACAATG
GTAGTTTTAC
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