EY702591

Overview
NameEY702591
Unique NameEY702591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.716e-46
Identity = 73/115 (63.48%), Postives = 87/115 (75.65%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            TKKTNNDITSIASNGGR+ CM+VWPP G KK ET SYLPPL +E L KE+ YL+R GWIPC EF+LEKG+V RE+  SP YYDGRYWT  +  L+G TD++  L  + +   EYP
Sbjct:   38 TKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYP 152          

HSP 2 Score: 48.1358 bits (113), Expect = 5.716e-46
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1
Query:   70 SMISSTTVATANRASLAQASMVAPFTGLKSSSG 168
            ++ISS  V T NRAS AQA++VAPFTGLKSS+G
Sbjct:    2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAG 34          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 4.757e-45
Identity = 76/115 (66.09%), Postives = 89/115 (77.39%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            TKK NND +S+ SNGGR+QCMKVWPP GLKK ET SYLPPL+DEAL KEI YL+R+ WIPC EF+LE G+V REH HSP YYDGRYWT  K  ++G TD+A  +  V E  +EYP
Sbjct:   38 TKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYP 152          

HSP 2 Score: 40.0466 bits (92), Expect = 4.757e-45
Identity = 18/29 (62.07%), Postives = 23/29 (79.31%), Query Frame = 1
Query:   76 ISSTTVATANRASLAQASMVAPFTGLKSS 162
            ISS+ +AT NR +  QAS+ APFTGLKS+
Sbjct:    4 ISSSAIATVNRTTSTQASLAAPFTGLKSN 32          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.331e-44
Identity = 75/118 (63.56%), Postives = 86/118 (72.88%), Query Frame = 3
Query:  171 GAGTKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            G  T+KTNNDITSIASNGGR+QCM+VWPP G KK ET SYLP L D  L KE+ YLLR GWIPC EF+LE G+V REH  SP YYDGRYWT  K  ++G TDA+  L  ++E    YP
Sbjct:   33 GFPTRKTNNDITSIASNGGRVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYP 150          

HSP 2 Score: 43.1282 bits (100), Expect = 2.331e-44
Identity = 24/36 (66.67%), Postives = 26/36 (72.22%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKSSSG 168
            +ASSMISS  V T NRA    A MVAPFTGLKS +G
Sbjct:    1 MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAG 33          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.036e-44
Identity = 69/115 (60.00%), Postives = 86/115 (74.78%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            T+K+NNDITS+ASNGGR+QCMKVWPP GL+K ET SYLPPL+ E+L K+I YL+  GWIPC EF+LE  +V RE+  SP YYDGRYW   K  ++G TDA   L  ++E  + YP
Sbjct:   40 TRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYP 154          

HSP 2 Score: 51.9878 bits (123), Expect = 3.036e-44
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKSSS 165
            +ASSMISS TVAT +RA+ AQA+MVAPFTGLKS++
Sbjct:    1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTA 35          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 8.756e-44
Identity = 72/115 (62.61%), Postives = 85/115 (73.91%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            T+KTNNDITSIASNGGR+QCM+VWPP GLKK ET SYLPPL+ E L KE+ YLLR   IPC EF+LE G+V REH  SP YYDGRYWT  K  ++G  D++  L  + E  + YP
Sbjct:   40 TQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYP 154          

HSP 2 Score: 46.9802 bits (110), Expect = 8.756e-44
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKSSS 165
            +A SMISS TVA  +RAS AQ+SMVAPFT LKS+S
Sbjct:    1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTS 35          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.487e-43
Identity = 71/115 (61.74%), Postives = 83/115 (72.17%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            T+KTN+DITSI SNGG++QCMKVWP  G+KK ET SYLPPL  E L  E+ YLLRSGWIPC EF+LE G V REH   P YYDGRYWT  K  ++G TDAA  L  + E  + +P
Sbjct:   40 TRKTNSDITSITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHP 154          

HSP 2 Score: 49.2914 bits (116), Expect = 1.487e-43
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKSS 162
            +ASSM+S+ TVA+ NR S AQA+MVAPFTGLKS+
Sbjct:    1 MASSMLSTATVASINRVSPAQATMVAPFTGLKST 34          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.525e-43
Identity = 68/115 (59.13%), Postives = 83/115 (72.17%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            T+K NNDITS+ASNGGR+QCM+VWPP G KK ET SYLP L    L KE+ YLLRS WIPC EF+LE+G+V R++   P YYDGRYWT  K  ++G TD+A  L  +    +EYP
Sbjct:   40 TRKANNDITSLASNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYP 154          

HSP 2 Score: 51.6026 bits (122), Expect = 2.525e-43
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKSSS 165
            +ASSMISS T+AT N +S AQA+MVAPFTGLKS+S
Sbjct:    1 MASSMISSATIATVNCSSPAQANMVAPFTGLKSAS 35          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.527e-43
Identity = 74/118 (62.71%), Postives = 85/118 (72.03%), Query Frame = 3
Query:  171 GAGTKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            G  T+KTNNDITSIASNGGR+QCM+VWPP G KK ET SYLP L D  L KE+ YLLR GWIPC EF+LE G+V REH  S  YYDGRYWT  K  ++G TDA+  L  ++E    YP
Sbjct:   33 GLPTRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSLGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYP 150          

HSP 2 Score: 43.1282 bits (100), Expect = 2.527e-43
Identity = 24/36 (66.67%), Postives = 26/36 (72.22%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKSSSG 168
            +ASSMISS  V T NRA    A MVAPFTGLKS +G
Sbjct:    1 MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAG 33          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.291e-43
Identity = 68/113 (60.18%), Postives = 85/113 (75.22%), Query Frame = 3
Query:  186 KTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            + +NDITSIASNGGR+QCM+VWPP GLKK ET SYLPPL+ E+L KE+ YLLR  W+PC EF+LE G+V RE+  SP YYDGRYWT  K  ++G TD++  L  + E  + YP
Sbjct:   43 RKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYP 155          

HSP 2 Score: 47.3654 bits (111), Expect = 3.291e-43
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1
Query:   61 LASSMISSTTVAT--ANRASLAQASMVAPFTGLKSSS 165
            +ASSMISS TVAT  A+R + AQA MVAPFTGLKSSS
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSS 37          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.588e-43
Identity = 70/115 (60.87%), Postives = 81/115 (70.43%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            T+KT  DITSIASNGGR+QCM+VWPP G K  ET SYLPPL  E L KE+ YLLR GW+PC EF+LE G V RE+  SP YYDGRYWT  K  ++G TDA   L  + E  + YP
Sbjct:   40 TRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYP 154          

HSP 2 Score: 50.8322 bits (120), Expect = 5.588e-43
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKSSS 165
            +ASSM+S+  VA  NRAS AQASMVAPFTGLKS+S
Sbjct:    1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTS 35          
The following BLAST results are available for this feature:
BLAST of EY702591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
RBS_MEDSA5.716e-4663.48Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LACSA4.757e-4566.09Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOYBN2.331e-4463.56Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_FAGCR3.036e-4460.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE8.756e-4462.61Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES1.487e-4361.74Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GOSHI2.525e-4359.13Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_SOYBN2.527e-4362.71Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS_MALSP3.291e-4360.18Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR5.588e-4360.87Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-G11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702591 ID=EY702591; Name=EY702591; organism=Citrus sinensis; type=EST; length=963bp
TAACCTCCAGTACCCGTCCCGGATTCCCTGCGCAACCCACCCCTCCGGGA
GCAAGTACCACTGGCTTCCTCAATGATCTCATCCACCACCGTTGCCACCG
CCAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGC
CTCAAGTCTTCTTCTGGTGGGGGGCGGGAACCAAGAAGACCAACAATGAC
ATTACTTCCATTGCAAGCAACGGCGGAAGACTCCAATGCATGAAGGTGTG
GCCACCAACTGGCTTGAAGAAGCTCGAGACTCCCTCATACCTCCCGCCAC
TGGCCGATGAAGCTCTGCTCAAGGAAATCACCTACCTTCTCCGCTCCGGC
TGGATTCCCTGCTCGGAATTCCAGTTGGAGAAAGGGTGGGTGGACCGCGA
GCACCCACACTCACCACGATACTACGATGGACGCTACTGGACAACGGCGA
AGCCTGCCCTGTATGGGCGCACAGATGCAGCCGCAGGCTTGAACGGGGTG
CGGGAGGGCCCGAGGGAATACCCCCCCCATTCCCCCGAACTAGCGGATTC
GACCACAACCCGCCCCGGGCCGCCGATCATTCTTCCTTGCCTGCAAGCCA
CCAGGCGCCAAGGGACCCCAATAAACTTGCGCATCCCCCCCCGGCCCCAG
CGGCCCGCCACGAGTAAGGGGACACCCCCCCAAAGACTCACTTCTAACCA
ATGGGGGGCCCCTATTCGCGGCTTAGTTCCGGGTTCCGCGCGGCGTGGGG
CCCGCTGCCCCAACCCTCTTCGGCTCTTTCACCCAACCTCACGCTTCATT
CCTTTCCACCTCAACATCTAAAAACTGCAATGGTTTGGCCCCACCCCCCT
CCTGGCCGCGGCCGGCGGCGGGGACCCCCCACCCGAGGGAGGATCCCGGG
GTAAATAGAACATCGGCTTGGGAACCACCCAAACACAAGAAGGGGCGGCC
CCCTTCAGGCGCC
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