EY702541

Overview
NameEY702541
Unique NameEY702541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702541 vs. ExPASy Swiss-Prot
Match: PGL1B_ARATH (PGR5-like protein 1B, chloroplastic OS=Arabidopsis thaliana GN=PGRL1B PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.300e-73
Identity = 88/123 (71.54%), Postives = 105/123 (85.37%), Query Frame = 2
Query:  212 SNSNTQF-----NGRQFTVRRRSFVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAG 565
            S+S TQ      +GR  ++RRR  +LP KA+TDQ GQV G+EV DSKIL YCSI+K EK+++GE+EQEFLQA+Q+FYYEGKA+MSNEEFDNLKEELMWEGSSVVMLSS EQ+FLEASMAYV+G
Sbjct:   21 SSSRTQCPAPFTHGRSISLRRRLTLLPLKASTDQSGQVGGEEV-DSKILPYCSINKNEKRTIGEMEQEFLQAMQSFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSG 142          

HSP 2 Score: 88.1965 bits (217), Expect = 8.300e-73
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 1
Query:  571 IMSDEEYDKLKQKLKMEGSEIVVEGPRCSLRSKKGYSDLAVDYLQMLLLNV 723
            I+SDEEYDKLK KLKM+GSEIV EGPRCSLRSKK YSDLA+DY +M LLNV
Sbjct:  145 ILSDEEYDKLKMKLKMDGSEIVCEGPRCSLRSKKVYSDLAIDYFKMFLLNV 195          

HSP 3 Score: 58.5362 bits (140), Expect = 8.300e-73
Identity = 35/64 (54.69%), Postives = 36/64 (56.25%), Query Frame = 3
Query:  726 ATVCALGXFFXLDEITGLEIT*SLELPNPSRFFFTWVGCGAFERKFIPIPPKLIGKDSLILKAP 917
            ATV ALG FF LD+ITG EIT  LELP P  F FTW               KLI KD LILK P
Sbjct:  197 ATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPAIVYLALSLTKLILKDFLILKGP 260          
BLAST of EY702541 vs. ExPASy Swiss-Prot
Match: PGL1A_ARATH (PGR5-like protein 1A, chloroplastic OS=Arabidopsis thaliana GN=PGRL1A PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.351e-71
Identity = 85/121 (70.25%), Postives = 103/121 (85.12%), Query Frame = 2
Query:  215 NSNTQFN----GRQFTVRRRSFVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAG 565
            +S TQ+     G+  ++RRR F+LP+KATT+Q G V GD V DS +L YCSI+K EKK++GE+EQEFLQALQ+FYY+GKA+MSNEEFDNLKEELMWEGSSVVMLSS EQ+FLEASMAYV+G
Sbjct:   34 SSRTQWTQLSPGKSISLRRRVFLLPAKATTEQSGPVGGDNV-DSNVLPYCSINKAEKKTIGEMEQEFLQALQSFYYDGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSG 153          

HSP 2 Score: 85.1149 bits (209), Expect = 3.351e-71
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 1
Query:  571 IMSDEEYDKLKQKLKMEGSEIVVEGPRCSLRSKKGYSDLAVDYLQMLLLNV 723
            I++DEEYDKLK KLK++GS+IV EGPRCSLRSKK YSDLAVDY +MLLLNV
Sbjct:  156 ILNDEEYDKLKLKLKIDGSDIVSEGPRCSLRSKKVYSDLAVDYFKMLLLNV 206          

HSP 3 Score: 58.151 bits (139), Expect = 3.351e-71
Identity = 34/64 (53.12%), Postives = 36/64 (56.25%), Query Frame = 3
Query:  726 ATVCALGXFFXLDEITGLEIT*SLELPNPSRFFFTWVGCGAFERKFIPIPPKLIGKDSLILKAP 917
            ATV ALG FF LD+ITG EIT  +ELP P  F FTW               KLI KD LILK P
Sbjct:  208 ATVVALGLFFFLDDITGFEITYIMELPEPYSFIFTWFAAVPVIVYLALSITKLIIKDFLILKGP 271          
The following BLAST results are available for this feature:
BLAST of EY702541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PGL1B_ARATH8.300e-7371.54PGR5-like protein 1B, chloroplastic OS=Arabidopsis... [more]
PGL1A_ARATH3.351e-7170.25PGR5-like protein 1A, chloroplastic OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-C04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702541 ID=EY702541; Name=EY702541; organism=Citrus sinensis; type=EST; length=920bp
CCACGCGTCCGCCACCATGCATCTCGCAACATCACCAGCTACACACTCTA
TTACTAGTATTTTCACCTGAAACCGAAACTACCATCTCTATTTTCAAATG
GCTGGCAAAGTAGCCTCTGGTTTTACCCCTCAGGGTCAGCGCGTCTTCGC
TGTCCCTGTGCAAAAGCCAGCTGCAGCCTTGGCTCCTTTTCCATCCTCTT
CAAGGGCTCACTCAAATTCAAATACTCAGTTCAATGGAAGGCAGTTTACT
GTTCGACGCAGATCTTTTGTACTGCCCAGCAAGGCTACTACTGACCAACA
AGGTCAGGTTGAGGGAGATGAGGTAGTCGATAGTAAAATTCTGCAATATT
GTAGCATTGACAAGAAAGAGAAAAAGTCATTGGGTGAACTAGAACAAGAG
TTTCTTCAGGCACTGCAAGCTTTCTATTACGAGGGAAAAGCTGTTATGTC
AAATGAGGAATTTGATAATCTTAAGGAAGAACTGATGTGGGAAGGAAGCA
GCGTCGTCATGCTAAGTTCTGCTGAACAAAAGTTTCTCGAAGCTTCAATG
GCTTATGTGGCTGGGAAACTATTATGTCGGATGAAGAGTATGATAAATTG
AAGCAGAAACTAAAGATGGAAGGGAGTGAAATTGTGGTTGAGGGTCCACG
GTGCAGTCTCCGTAGCAAAAAGGGTTACAGCGACCTGGCAGTTGACTACC
TCCAAATGCTCCTTTTGAATGTGCAGCCACTGTTTGTGCACTGGGATNGT
TTTTCTNCCTGGATGAAATCACTGGATTGGAAATCACATAATCTTTGGAG
CTTCCAAACCCTTCCAGGTTCTTTTTTACATGGGTTGGCTGCGGGGCCTT
TGAAAGAAAATTTATCCCAATCCCTCCCAAACTGATCGGAAAAGACTCTT
TGATTCTTAAGGCCCCTGCC
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