DY305461

Overview
NameDY305461
Unique NameDY305461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1895 contig Csv1_Contig1895:190..1070. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY305461 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.232e-27
Identity = 89/238 (37.39%), Postives = 102/238 (42.86%), Query Frame = 2 
Query:    8 WTKRKRSKRPHNPPTEEEYLALCLVMLARGXXXXXXXXXXXXXXXXXQRQKXXXXXXXXXXXXXDQKLVFKCSVCDKAFSSYQALGGHKASHR--KGSGGGDEHXXXXXXXXXXXXXXXGV-----------PNATGRTHECSICHKSFPTGQALGGHKRCHYDGG-----------EKXXXXXXXXXXXXXXXXXRDFDLNLPVLPEL------SPAFFFSGDDEVESPLPAKKPRL 631
            W KRKRS+R  +   EEE LALCL+ML+RG                 QR +             +    FKCSVC K+FSSYQALGGHK SHR  + S   D                                AT R H CSIC K FPTGQALGGHKR HYDGG                              R FDLN+P +PE            +  D+EV+SPL  KKPRL
Sbjct:   43 WAKRKRSRRQRS---EEENLALCLLMLSRGGK---------------QRVQAPQPESFAAPVPAE----FKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKRKHYDGGVGAAASSTELLAAAAAESEVGSTGNGSSAARAFDLNIPAVPEFVWRPCAKGKMMWEDDEEVQSPLAFKKPRL 258
The following BLAST results are available for this feature:
BLAST of DY305461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT4.232e-2737.39Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1AC06RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305461 ID=DY305461; Name=DY305461; organism=Citrus sinensis; type=EST; length=883bp
GGAGCCATGGACCAAACGCAAGCGCTCAAAGCGTCCACACAATCCTCCAA
CTGAAGAAGAGTATCTCGCGCTCTGCCTCGTCATGCTTGCACGTGGCACA
ACCTCCACCGCCGCCTTAACTAACTGCAACACGACCACCACCGCCTCACA
GCGACAGAAGTCTCCTGCTCCATCTACTGCTGCAACGACGTCGTCCTCTG
ACCAGAAGCTTGTCTTCAAGTGCAGCGTGTGCGACAAGGCGTTTTCTTCT
TACCAAGCCTTGGGTGGTCACAAGGCCAGCCACCGTAAGGGATCTGGGGG
CGGCGACGAACACTCCGCTTCCACTACCACCAACACCAACGCAACCGCCA
CGACCACCGGCGTACCGAACGCCACTGGTAGGACCCACGAGTGTTCCATC
TGTCACAAGTCCTTCCCCACCGGCCAAGCCTTGGGCGGACACAAACGTTG
TCACTACGATGGCGGCGAGAAGAGCGGAGTGACGTCATCCGGGTCCAGTA
GCACTCACAGCCAAGTCAGCCACCGTGACTTTGACCTCAACCTCCCTGTC
TTACCGGAGCTCTCCCCTGCTTTCTTCTTCTCTGGTGATGACGAGGTGGA
GAGTCCACTGCCGGCGAAGAAGCCGCGTCTCTTCTTGCCCCCCAAAATCG
AAGTTTAATTTACTTAATTGCCACTTTTTTTTTGTTTTTGGGCTACTTTT
AAGGATGTTAAGTTTAGGCAAATATATTTCGTGTATTTCTTTACTGTTAC
TTGCGTCAGTGACTAATTTTTTTGTGTACATAAGCATTTGAGATTCTCAC
AGTTGCTCAGCTGTGACTTCCTGATTGTGATTTATTCAATTAATTTTTTT
CGAATTTATTAATTAAAAAAAACGCAAATTATT
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