EY702537

Overview
NameEY702537
Unique NameEY702537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702537 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 4.648e-72
Identity = 85/112 (75.89%), Postives = 92/112 (82.14%), Query Frame = 1
Query:   13 GKDPAFLKWYREAELIHGRWAMAAVVGIFLGQTWSXXXXXXXXXXXXXXXXFSFGSLLGTQLLLMGWVESKRWADFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKVF 348
            GKDPAFLKWYREAELIHGRWAMAAV+GIF+GQ WS                FSFG+LLGTQL+LMGWVESKRW DFF+P+SQSVEWATPWS+TAENFAN TGEQGYPGGK F
Sbjct:   87 GKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFF 198          

HSP 2 Score: 107.457 bits (267), Expect = 4.648e-72
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 2
Query:  347 FDPLCLAGTIKDGVYIPDTEKLDRLKAAEIKHARLAMAAMLIFYFEAGQGKTPLGALGL 523
            FDPL LAGT+ +GVY+PDTEKL+RLK AEIKHARLAM AMLIFYFEAGQGKTPLGALGL
Sbjct:  198 FDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL 256          
BLAST of EY702537 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.125e-70
Identity = 84/112 (75.00%), Postives = 92/112 (82.14%), Query Frame = 1
Query:   13 GKDPAFLKWYREAELIHGRWAMAAVVGIFLGQTWSXXXXXXXXXXXXXXXXFSFGSLLGTQLLLMGWVESKRWADFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKVF 348
            GKDPAFLKWYREAELIHGRWAM AV+GIF+GQ W+                FSFG+LLGTQLLLMGWVESKRW DFF+P+SQSVEWATPWSRTAENF+N+TGEQGYPGGK F
Sbjct:   92 GKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFF 203          

HSP 2 Score: 103.99 bits (258), Expect = 1.125e-70
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 2
Query:  347 FDPLCLAGTIKDGVYIPDTEKLDRLKAAEIKHARLAMAAMLIFYFEAGQGKTPLGALGL 523
            FDPL LAGTI +GVY PDT+KL+RLK AEIKHARLAM AMLIFYFEAGQGKTPLGALGL
Sbjct:  203 FDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL 261          
BLAST of EY702537 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.125e-70
Identity = 84/112 (75.00%), Postives = 91/112 (81.25%), Query Frame = 1
Query:   13 GKDPAFLKWYREAELIHGRWAMAAVVGIFLGQTWSXXXXXXXXXXXXXXXXFSFGSLLGTQLLLMGWVESKRWADFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKVF 348
            GKDPAFLKWYREAELIHGRWAMAAV+GIF+GQ WS                FSFGSLLGTQLLLMGWVESKRW DFF+ +SQS++WATPWS+TAENFAN TGEQGYPGGK F
Sbjct:   87 GKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFF 198          

HSP 2 Score: 105.916 bits (263), Expect = 1.125e-70
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 2
Query:  347 FDPLCLAGTIKDGVYIPDTEKLDRLKAAEIKHARLAMAAMLIFYFEAGQGKTPLGALGL 523
            FDPL LAGT+ +GVY+PDTEKL+RLK AEIKH+RLAM AMLIFYFEAGQGKTPLGALGL
Sbjct:  198 FDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEAGQGKTPLGALGL 256          
BLAST of EY702537 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 6.947e-11
Identity = 39/124 (31.45%), Postives = 55/124 (44.35%), Query Frame = 1
Query:   13 GKDPAFLKWYREAELIHGRWAMAAVVGIFLGQTWSXXXXXXXXXXXXXXXXFSF---GSLLGTQLLLMGWVESKRWADFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKVF*SLMFGWNN 375
            G DP  LKW  +AEL+H RWAM    GIF+ +  +                  F    +L   +L+L+GW E +RWAD   P   + +   P ++          + GYPGG  F  L  GW +
Sbjct:   94 GSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT------DVGYPGGLWFDPL--GWGS 209          

HSP 2 Score: 25.409 bits (54), Expect = 6.947e-11
Identity = 11/26 (42.31%), Postives = 18/26 (69.23%), Query Frame = 2
Query:  407 KLDRLKAAEIKHARLAMAAMLIFYFE 484
            K+  L+  EIK+ RLAM A++  +F+
Sbjct:  214 KIKELRTKEIKNGRLAMLAVMGAWFQ 239          
The following BLAST results are available for this feature:
BLAST of EY702537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CB4A_SOLLC4.648e-7275.89Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4_SPIOL1.125e-7075.00Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4B_SOLLC1.125e-7075.00Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB12_PETHY6.947e-1131.45Chlorophyll a-b binding protein, chloroplastic OS=... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-B11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702537 ID=EY702537; Name=EY702537; organism=Citrus sinensis; type=EST; length=851bp
CCACGCGTCCGTGGAAAGGACCCAGCATTCCTGAAATGGTACAGAGAAGC
AGAACTGATCCACGGACGATGGGCAATGGCTGCAGTTGTTGGGATATTCC
TCGGACAGACGTGGAGTGGGATTCCATGGGGCGGGGGTGGAGCAGATCCT
GGAGCCATAGCACCCTTCTCCTTCGGCTCACTCCTGGGAACCCAGCTTCT
CCTTATGGGTTGGGTTGAGAGCAAGCGGTGGGCTGATTTTTTCAATCCTG
AATCCCAATCAGTTGAATGGGCAACACCATGGTCAAGAACTGCTGAAAAC
TTTGCCAATGCGACTGGTGAACAAGGCTACCCTGGTGGAAAGGTGTTTTG
ATCCCTTATGTTTGGCTGGAACAATTAAGGATGGTGTCTACATTCCTGAC
ACTGAGAAGCTTGACAGGCTCAAAGCTGCTGAGATTAAACATGCTAGGCT
TGCTATGGCGGCCATGTTGATTTTCTACTTTGAAGCCGGCCAAGGCAAGA
CCCCACTTGGGGCTCTTGGCTTGCCGAACATGCTTATGTACATAACTCCC
TGATCGATGTTAAAGGGTACTCCATCGGATGTATATGACTTCCCTCCATG
AGAGTTCCATTTGATGGGGGTTAGTCTGGTATTCCCCCTTGAGATCCTCA
AGAATCTAAAACCCCATCGAAATCCTCCCCCATTCTCACAAGGTCAAACA
AAAAAAAACACAGGGCGGCCCCTCTCAGGGCCCCCCCTTTCTACCCCCGC
CTGCCCACCTCCTACCCTCCCCACACGCGCCCCTCCCCTCCCTCCCCCGG
CCGCGTTCCACCCCCCCCGGACCGGAAACCCTGCCCGTACCCCACCTACC
C
back to top