DY305444

Overview
NameDY305444
Unique NameDY305444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1249
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_ORYSJ (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 2.853e-89
Identity = 164/222 (73.87%), Postives = 183/222 (82.43%), Query Frame = 1
Query:    4 DVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXXEYVDXXXXXXXXXTEPHKANEAIKK 669
            DVPPTVAETKMNFLK YKRPI SIY+TVLQEL+VQQHLMRYK TYQYD VFALGFVTVYD+LMEGYPS+EDR+AIF+AYITAL EDPEQYR DAQK+EEWAR Q  +SLVEF SK+GE+E IL DI+ERA GKG+FSYSRFFAVGLFRLLELANATEPT+L+KLCA LN+NKRSVDRDLDVYRN             EYV+         +E  K+NEA+ K
Sbjct:   56 DVPPTVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALGFVTVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFSSKDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_ARATH (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 1.084e-88
Identity = 163/231 (70.56%), Postives = 187/231 (80.95%), Query Frame = 1
Query:    1 ADVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXXEYVDXXXXXXXXXTEPHKANEAIKKCLGEYLYS 693
            ADVPP V+ETK  FLK YKRPIPSIYNTVLQELIVQQHLMRYK+TY+YDPVFALGFVTVYD+LMEGYPSD+DR+AIF+AYI AL EDP+QYRIDAQK+EEWAR QT++SLV+F SKEG++E +L DIA RA  K  FSYSRFFAVGLFRLLELA+AT+PTVL+KLCA LN+NK+SVDRDLDVYRN             EYV+          +  KANE I KCLG+ LY+
Sbjct:   62 ADVPP-VSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFVTVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKEGDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGDTLYN 291          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_SOLTU (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 4.264e-85
Identity = 157/227 (69.16%), Postives = 178/227 (78.41%), Query Frame = 1
Query:   13 PTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXXEYVDXXXXXXXXXTEPHKANEAIKKCLGEYLYS 693
            PTVA+TK+ FL  YKRPIP++YNTVLQELIVQQHL RYK++YQYDPVFALGFVTVYD+LMEGYPS+EDR AIF+AYI ALKEDPEQYR DAQKLEEWAR Q A++LV+F SKEGE+E I  DIA+RA  K  F YSR FAVGLFRLLELAN T+PT+LEKLCA LNVNK+SVDRDLDVYRN             EYV+          E  KANE + KCLG+Y Y+
Sbjct:   66 PTVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFALGFVTVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFSSKEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKSVDRDLDVYRNLLSKLVQAKELLKEYVE-REKKKRGERETQKANETVTKCLGDYQYA 291          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_ACAM1 (Protein thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 9.329e-32
Identity = 72/191 (37.70%), Postives = 118/191 (61.78%), Query Frame = 1
Query:   16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEG-----EVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELA--NATE-----PTVLEKLCAVLNVNKRSVDRDLDVYR 552
            TV++TK  F  ++ RP+ S+Y  V++EL+V+ HL+R    ++YDP+FALG  T +DR M+GY  + D++AIF A   A + DP Q + D Q+L E A+ ++A  ++++ ++       E++  L +IA+       F YSR FA+GLF LLEL+  N T+        L  +C VLN+++  + +DL++YR
Sbjct:    6 TVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFDRFMDGYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGGDELQWQLRNIAQNP----KFKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVLNISESKLQKDLEIYR 192          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_TRIEI (Protein thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.347e-30
Identity = 74/187 (39.57%), Postives = 108/187 (57.75%), Query Frame = 1
Query:   16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEF--PSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANA-------TEPTVLEKLCAVLNVNKRSVDRDLDVY 549
            TV++TK  F   + RPI SIYN V++EL+V+ HL+     Y Y+P +ALG VT +DR M+GY   ED+ +IF A I   +EDP +YR DA+ LE+ A   +AS ++ +   SK  +    L D     S    F YSR FA+GLF LLE+ +             L+K+C  LN+ +  + +D+D+Y
Sbjct:    6 TVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFDRFMQGYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQYLQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTELIKEQEKRTEALKKICQSLNLVEEKLLKDIDLY 192          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_ANASP (Protein thf1 OS=Anabaena sp. (strain PCC 7120) GN=thf1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.489e-29
Identity = 68/189 (35.98%), Postives = 113/189 (59.79%), Query Frame = 1
Query:   16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV--EGILNDIAERASGKGNFSYSRFFAVGLFRLLELAN-------ATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 555
            TV++TK  F  L+ RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +DR MEGY  + D+E+IF A   A++++P++YR DA++L+  A+    + LV + S+   +  +  L    +  +   NF YSR FA+GLF LLE +N             L+ + A L+++     +DL++YR+
Sbjct:    6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMEGYQPERDKESIFSAICQAVEQEPQRYRQDAERLQAVAQSLPVNDLVAWLSQANHLQQDADLQAQLQAIANNSNFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKSIAAGLHLSDDKFSKDLELYRS 194          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_ANAVT (Protein thf1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=thf1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.660e-29
Identity = 67/189 (35.45%), Postives = 114/189 (60.32%), Query Frame = 1
Query:   16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV--EGILNDIAERASGKGNFSYSRFFAVGLFRLLELAN-------ATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 555
            TV++TK  F  L+ RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +DR M+GY  + D+E+IF A   A++++P++YR DA++L+  A+    + LV + S+   +  +  L    +  +   NF YSR FA+GLF LLE +N             L+ + A L+++   + +DL++YR+
Sbjct:    6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMQGYQPERDKESIFSAICQAVEQEPQRYRQDAERLKAVAQSLPVNDLVAWLSQANHLQQDADLQAQLQAIASNPNFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKTIAAGLHLSDDKLSKDLELYRS 194          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_NOSP7 (Protein thf1 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=thf1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 7.392e-29
Identity = 69/193 (35.75%), Postives = 117/193 (60.62%), Query Frame = 1
Query:   16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV------EFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELAN----ATEPTVLEKLCAV---LNVNKRSVDRDLDVYRN 555
            TV++TK  F  L+ RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +DR M+GY  + D+E+IF A   A+++DP+ YR DA++L+  A+G     L+       +  ++ +++  L  IA       NF Y+R FA+G+F LLE ++      E  + E L A+   L+V+   +++DL++YR+
Sbjct:    6 TVSDTKRTFYNLHTRPINTIYRRVVEELMVEMHLLSVNIDFSYNPIYALGVVTTFDRFMQGYEPERDQESIFNALCRAIEQDPQHYRQDAERLQAIAKGLPVKDLIGWLGQTTYLDRDADLQAQLQAIANNP----NFKYNRLFAIGVFSLLEQSDPELVKDEKQLTEALKAIAAGLHVSDDKLNKDLELYRS 194          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_CYAP4 (Protein thf1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=thf1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 9.654e-29
Identity = 77/190 (40.53%), Postives = 112/190 (58.95%), Query Frame = 1
Query:   10 PPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERA-SGKGNFSYSRFFAVGLFRLLELA-------NATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 555
            P TV++TK  F   + RPI SIY  V++EL+V+ HL+R  +T+ YDPVFALG VT ++R M+GY    D+ +IF A   A + DP+Q + DAQ+L    RGQ+  SL+++ S    + G       RA +    F YSR FAVGLF LLE A        A    VL+++  V+++    + +DL+ YR+
Sbjct:    4 PRTVSDTKRAFYHNHARPINSIYRRVVEELLVEIHLLRVNQTFVYDPVFALGVVTTFERFMQGYHPPADQTSIFNAICLAQELDPQQVQQDAQELLGRVRGQSLESLLDWISTAASLGGDEQQNRLRAIASNPTFKYSRLFAVGLFTLLEQAEPELGKDEARLLQVLQQVGEVMHLPVEKMQKDLEQYRS 193          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_CYAP7 (Protein thf1 OS=Cyanothece sp. (strain PCC 7424) GN=thf1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.106e-27
Identity = 67/190 (35.26%), Postives = 113/190 (59.47%), Query Frame = 1
Query:   16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGN---FSYSRFFAVGLFRLL-----ELANATE--PTVLEKLCAVLNVNKRSVDRDLDVYRN 555
            TV+++K +F   + RPI S+Y  V++EL+V+ HL+     +QYDPV+ALG VT + R M+GY  D D+E+IF A   ++  DP+QYR DA+++ E A+  +A  L+       +     N I +   G  N   + Y+R FA+G++ +L     E+   TE    V++++  VL++ +  + +DLD+YR+
Sbjct:    6 TVSDSKRDFYTKHTRPINSVYRRVVEELMVEMHLLSVNSDFQYDPVYALGVVTSFQRFMQGYRPDADKESIFNALCQSVGGDPQQYRQDAERMIESAKQLSAQQLLFNLESASDSSSGENQILQTLIGIANAPKYKYTRLFAIGIYTILAETDPEMLKNTEKREEVVKQIAKVLHLPEEKMQKDLDLYRS 195          
The following BLAST results are available for this feature:
BLAST of DY305444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
THF1_ORYSJ2.853e-8973.87Protein THYLAKOID FORMATION1, chloroplastic OS=Ory... [more]
THF1_ARATH1.084e-8870.56Protein THYLAKOID FORMATION 1, chloroplastic OS=Ar... [more]
THF1_SOLTU4.264e-8569.16Protein THYLAKOID FORMATION1, chloroplastic OS=Sol... [more]
THF1_ACAM19.329e-3237.70Protein thf1 OS=Acaryochloris marina (strain MBIC ... [more]
THF1_TRIEI1.347e-3039.57Protein thf1 OS=Trichodesmium erythraeum (strain I... [more]
THF1_ANASP1.489e-2935.98Protein thf1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]
THF1_ANAVT5.660e-2935.45Protein thf1 OS=Anabaena variabilis (strain ATCC 2... [more]
THF1_NOSP77.392e-2935.75Protein thf1 OS=Nostoc punctiforme (strain ATCC 29... [more]
THF1_CYAP49.654e-2940.53Protein thf1 OS=Cyanothece sp. (strain PCC 7425 / ... [more]
THF1_CYAP73.106e-2735.26Protein thf1 OS=Cyanothece sp. (strain PCC 7424) G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AA05RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305444 ID=DY305444; Name=DY305444; organism=Citrus sinensis; type=EST; length=1249bp
GCTGATGTGCCTCCTACTGTGGCCGAGACAAAGATGAATTTTCTGAAGTT
ATATAAGAGACCAATCCCCAGTATTTACAACACCGTTCTACAGGAATTGA
TTGTCCAACAACATTTGATGAGGTACAAAAGAACATACCAATATGACCCT
GTGTTTGCCCTTGGATTTGTCACTGTATATGATCGACTCATGGAAGGCTA
TCCAAGTGATGAGGATCGAGAAGCCATCTTCCAAGCATACATTACGGCAC
TGAAGGAGGATCCAGAGCAATACAGAATTGATGCACAAAAGTTAGAGGAA
TGGGCTCGGGGTCAGACTGCCAGTTCATTAGTTGAGTTCCCATCTAAAGA
AGGAGAAGTTGAGGGGATATTGAACGACATTGCAGAAAGAGCCAGCGGCA
AGGGGAATTTCAGCTACAGCCGTTTCTTTGCTGTTGGGCTGTTTCGCCTT
CTTGAACTGGCAAATGCAACTGAACCCACAGTGTTAGAAAAGCTTTGTGC
AGTCTTAAATGTTAACAAAAGAAGTGTGGATCGTGACCTTGATGTATATC
GCAATTTATTATCCAAGCTGCTTCAAGCTAAAGAGTTGCTGAAGGAGTAT
GTGGATAGGGAAAAGAAGAAGAGAGAAGAAAGGACAGAACCGCACAAGGC
TAATGAAGCCATTAAAAAATGTCTGGGAGAATACCTATATTCCCATCAGT
AATTCCACCTGTGAACGAAACCGGCAATGCTAATCATCTCCTGTGAAGTT
TTCATCCCGTTTTTGTCTGCTTTGCGGTAGAGTTGGAACCCTCATGCCTC
ACGTACCATGTTTTAACCCTACAGGCTTGCCTGTTCCAATGACTTGTTTT
ATAACCGTGATTTGCAAACGTCCAGGCTTCACCAAGCTAATACCCAAATT
TCTTCTGGTTCAAAAAAAAAAAACAAAAAATAACTAGCGGGGGGGCCCGG
TTCCCACTTCCCCATACCATGTTCCTAAAACAATTCCACTGGCCCCGCTT
TTTTCACCTCCGTGACGGGGAAACCCAAGGGGATACCCCATTATATCCCC
GTTGGGCCCACCTCCACTTCCTCACAACGGGAAAGTATCCAGAAAGCGCC
CCCACCCTTTCCCCTTACCTAAACTCTCGAAACCCCAAAGGGGAAATTGG
GAGAATTACAGACCACTAAATTTTTTGGTTACAATTTTCCCGTTGTGTAT
ATTTTTTTTTTGTATTGACCGCCCCGCTCAATGTTTTTTTAACTCAAAA
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