EY702498

Overview
NameEY702498
Unique NameEY702498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702498 vs. ExPASy Swiss-Prot
Match: R27A2_ARATH (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.395e-28
Identity = 34/42 (80.95%), Postives = 40/42 (95.24%), Query Frame = 2
Query:    2 LRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGY 127
            LRNKF CPIVN+DKLWS+VP+DVKAK+SKDNVP+IDVTQ G+
Sbjct:   64 LRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGF 105          

HSP 2 Score: 67.3958 bits (163), Expect = 4.395e-28
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 3
Query:  129 FKVLGKGVLPENQPVVGKAKLVSKTAEKKIQHAGGAVVLTA 251
            FKVLGKG LPEN+P V KAKL+SKTAEKKI+ AGGAVVLTA
Sbjct:  106 FKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146          
BLAST of EY702498 vs. ExPASy Swiss-Prot
Match: R27A3_ARATH (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 9.699e-28
Identity = 33/42 (78.57%), Postives = 40/42 (95.24%), Query Frame = 2
Query:    2 LRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGY 127
            LRNKF CPIVN+DKLWS+VP+DVKAK++KDNVP+IDVTQ G+
Sbjct:   64 LRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGF 105          

HSP 2 Score: 67.3958 bits (163), Expect = 9.699e-28
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 3
Query:  129 FKVLGKGVLPENQPVVGKAKLVSKTAEKKIQHAGGAVVLTA 251
            FKVLGKG LPEN+P V KAKL+SKTAEKKI+ AGGAVVLTA
Sbjct:  106 FKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146          
BLAST of EY702498 vs. ExPASy Swiss-Prot
Match: RL27A_EUPCR (60S ribosomal protein L27a OS=Euplotes crassus GN=RPL27A PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 1.146e-12
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 3
Query:  129 FKVLGKGVLPENQPVVGKAKLVSKTAEKKIQHAGGAVVLTA 251
            +KVLGKG+LPE  P+V KAKL + TAEK+I+  GGA VL A
Sbjct:  108 YKVLGKGLLPE-VPLVVKAKLFTPTAEKRIKQVGGACVLRA 147          

HSP 2 Score: 45.8246 bits (107), Expect = 1.146e-12
Identity = 19/44 (43.18%), Postives = 31/44 (70.45%), Query Frame = 2
Query:    2 LRNKFHCPIVNIDKLWSMVPQD--VKAKASKDNVPMIDVTQFGY 127
            +RN+++CP +N+ KLWS+V ++   KA+  K  V +IDV + GY
Sbjct:   64 MRNQYYCPSINLSKLWSLVTEEERQKAQTDKSKVILIDVVKHGY 107          
The following BLAST results are available for this feature:
BLAST of EY702498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
R27A2_ARATH4.395e-2880.9560S ribosomal protein L27a-2 OS=Arabidopsis thalia... [more]
R27A3_ARATH9.699e-2878.5760S ribosomal protein L27a-3 OS=Arabidopsis thalia... [more]
RL27A_EUPCR1.146e-1263.4160S ribosomal protein L27a OS=Euplotes crassus GN=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-F09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702498 ID=EY702498; Name=EY702498; organism=Citrus sinensis; type=EST; length=626bp
ACTCCGCAACAAATTCCACTGCCCCATCGTCAACATCGACAAGCTCTGGT
CCATGGTCCCACAAGATGTGAAAGCAAAGGCCAGCAAGGACAATGTTCCG
ATGATTGATGTCACTCAGTTCGGCTACCTTTAAGGTTTTGGGCAAAGGTG
TTTTGCCCGAGAACCAGCCCGTCGTTGGCAAGGCCAAGCTCGTTTCTAAG
ACCGCTGAGAAGAAGATCCAACACGCTGGTGGCGCTGTTGTGCTCACAGC
TTACGGGTATTTTGGGAACTCTCCCTTGTCTAGGGATTTTCTTTTATTCT
GGGATCCGGTGAGACTTATTCAAATCCCCAGGGTTTTATCCTTTTTCTGG
GGATATCCCTCCGCTAATGATTAAATGGGACCTCGATCTCAAAACAACAA
AAAAGGGGGGGCCCCTCCAAAAGATCCCAGCCTTACGTACGCCTGGCATG
CGCCCCACTAAGCCCTTCTATAGGGGCCCCCTAAATAAATTCACTGGGGC
GGCCCTCTTCCACCGCCGGGACGGGGAAAACCTTGGCGCGTCCCCCCTTC
ATCCCCCCTGCAACCCTTCCCCCTTTCCCCAGCTTGGCGTAATCCCCAAG
AAGGCCCCCCCCCCTCCCCCCTCCCC
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