EY702493

Overview
NameEY702493
Unique NameEY702493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3668 contig Csv1_Contig3668:369..1275. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702493 vs. ExPASy Swiss-Prot
Match: PGDH_CAVPO (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Cavia porcellus GN=HPGD PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.957e-15
Identity = 52/154 (33.77%), Postives = 77/154 (50.00%), Query Frame = 3
Query:   12 WRFTFDVNLIAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPVYNDPIYSASKGGVVLFTRSLTPYKR---KGIRINVLCPEFVQTEMGLKVGSK-----FIDLMG---------GFVPMEMVVKGAFELITDESKAGSCLWITNRRGMEY 416
            W  T  +NL++VI  T   +  M  Q   + GVIINM S AGL PV   P+Y ASK G++ FTRS    ++    G+R+N +CP FV T +   +  +     +I+  G         G +  EM+  G   LI D+   G+ + IT   G+ +
Sbjct:  100 WEKTLQINLVSVISGTYLGLDYMSKQHGGEGGVIINMSSLAGLMPVAQQPVYCASKHGIIGFTRSAAMARKLMNSGVRMNAICPGFVNTSILQSIEKEENMGPYIEYTGHIKDMMKCYGILDPEMIANGLITLIEDDDLNGAIMKITTSNGIHF 253          
BLAST of EY702493 vs. ExPASy Swiss-Prot
Match: PGDH_BOVIN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bos taurus GN=HPGD PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.588e-15
Identity = 52/154 (33.77%), Postives = 76/154 (49.35%), Query Frame = 3
Query:   12 WRFTFDVNLIAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPVYNDPIYSASKGGVVLFTRS---LTPYKRKGIRINVLCPEFVQTEMGLKVG-----SKFIDLMG---------GFVPMEMVVKGAFELITDESKAGSCLWITNRRGMEY 416
            W  T  +NL++VI  T   +  M  Q   + G+ INM S AGL PV   P+Y ASK G+V FTRS          G+R+N +CP FV T +   +       K+I+ MG         G +   M+  G   LI D++  G+ + IT  +G+ +
Sbjct:  100 WEKTLQINLVSVISGTYLGLDYMSKQNGGEGGININMSSLAGLMPVAQQPVYCASKHGIVGFTRSAAMAANLMNSGVRLNAICPGFVDTPILKSIEKEENMGKYIEYMGPIKDMMKYYGILDPSMIANGLITLIEDDALNGAIMKITTSKGIHF 253          
BLAST of EY702493 vs. ExPASy Swiss-Prot
Match: PGDH_MOUSE (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Mus musculus GN=Hpgd PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.243e-13
Identity = 53/158 (33.54%), Postives = 76/158 (48.10%), Query Frame = 3
Query:   12 WRFTFDVNLIAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPVYNDPIYSASKGGVVLFTRS---LTPYKRKGIRINVLCPEFVQT----------EMG--------LKVGSKFIDLMGGFVPMEMVVKGAFELITDESKAGSCLWITNRRGMEY 416
            W  T  +NL++VI  T   +  M  Q   + G+IINM S AGL PV   P+Y ASK G++ FTRS        + G+R+NV+CP FV T           MG        +K   KF     G +    +  G   LI D++  G+ + IT  +G+ +
Sbjct:  100 WEQTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIIGFTRSAAMAANLMKSGVRLNVICPGFVDTPILESIEKEENMGQYIEYKDQIKAMMKFY----GVLHPSTIANGLINLIEDDALNGAIMKITASKGIHF 253          
BLAST of EY702493 vs. ExPASy Swiss-Prot
Match: PGDH_RAT (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Rattus norvegicus GN=Hpgd PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.623e-13
Identity = 52/158 (32.91%), Postives = 77/158 (48.73%), Query Frame = 3
Query:   12 WRFTFDVNLIAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPVYNDPIYSASKGGVVLFTRS---LTPYKRKGIRINVLCPEFVQT----------EMG--------LKVGSKFIDLMGGFVPMEMVVKGAFELITDESKAGSCLWITNRRGMEY 416
            W  T  +NL++VI  T   +  M  Q   + G+IIN+ S AGL PV   P+Y ASK G++ FTRS        + G+R+NV+CP FV+T           MG        +K   KF     G +    +  G   LI D++  G+ + IT  +G+ +
Sbjct:  100 WEQTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINISSIAGLMPVAQQPVYCASKHGIIGFTRSAAMAANLMKSGVRLNVICPGFVKTPILESIEKEENMGQYIEYTDQIKAMMKFY----GILDPSAIANGLINLIEDDALNGAIMKITASKGIHF 253          
BLAST of EY702493 vs. ExPASy Swiss-Prot
Match: PGDH_MACFA (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Macaca fascicularis GN=HPGD PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.623e-13
Identity = 52/154 (33.77%), Postives = 76/154 (49.35%), Query Frame = 3
Query:   12 WRFTFDVNLIAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPVYNDPIYSASKGGVVLFTRS---LTPYKRKGIRINVLCPEFVQT----------EMGLKVGSK--FIDLMG--GFVPMEMVVKGAFELITDESKAGSCLWITNRRGMEY 416
            W  T  +NL++VI  T   +  M  Q   + G+IINM S AGL PV   P+Y ASK G+V FTRS          G+R+N +CP FV T           MG  +  K    D++   G +   ++  G   LI D++  G+ + IT  +G+ +
Sbjct:  100 WEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHF 253          
BLAST of EY702493 vs. ExPASy Swiss-Prot
Match: PGDH_HUMAN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Homo sapiens GN=HPGD PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.623e-13
Identity = 52/154 (33.77%), Postives = 76/154 (49.35%), Query Frame = 3
Query:   12 WRFTFDVNLIAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPVYNDPIYSASKGGVVLFTRS---LTPYKRKGIRINVLCPEFVQT----------EMGLKVGSK--FIDLMG--GFVPMEMVVKGAFELITDESKAGSCLWITNRRGMEY 416
            W  T  +NL++VI  T   +  M  Q   + G+IINM S AGL PV   P+Y ASK G+V FTRS          G+R+N +CP FV T           MG  +  K    D++   G +   ++  G   LI D++  G+ + IT  +G+ +
Sbjct:  100 WEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHF 253          
The following BLAST results are available for this feature:
BLAST of EY702493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PGDH_CAVPO2.957e-1533.7715-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ca... [more]
PGDH_BOVIN6.588e-1533.7715-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bo... [more]
PGDH_MOUSE1.243e-1333.5415-hydroxyprostaglandin dehydrogenase [NAD+] OS=Mu... [more]
PGDH_RAT1.623e-1332.9115-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ra... [more]
PGDH_MACFA1.623e-1333.7715-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ma... [more]
PGDH_HUMAN1.623e-1333.7715-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ho... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-F04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702493 ID=EY702493; Name=EY702493; organism=Citrus sinensis; type=EST; length=905bp
CCACGCGTCCGTGGAGATTCACTTTCGATGTGAACTTGATTGCAGTTATT
GATTGCACTCAGAAAGCTATTGGAATTATGCAAGCTGCAAAAAAGCCTGG
AGTGATTATAAATATGGGATCTTCTGCAGGGCTTTATCCAGTGTACAATG
ATCCTATCTACTCTGCTTCCAAAGGTGGTGTTGTTTTATTTACTAGATCA
CTTACTCCCTACAAACGCAAGGGAATTCGCATCAATGTGCTTTGCCCTGA
GTTTGTTCAAACTGAGATGGGATTAAAGGTGGGCTCCAAATTTATTGATC
TGATGGGGGGCTTTGTACCTATGGAAATGGTAGTGAAAGGTGCTTTTGAG
CTTATTACTGACGAGAGTAAAGCTGGATCATGCCTATGGATTACAAATCG
CAGAGGCATGGAGTATTGGCCCACCTCTGAAGAAAAAGCAAAATACTTGG
TGCGCTCTTCANGTTCCATGAAAAGATCCTCATCGCAGGTTCCTTTGAAT
CTGAATGTCCAACTTCCTGAAAGTTTTGAGAAATTAGTTGTTCATACCTT
GAATCATAATTTTCGCGATGCAACTATCAAAGTTCGTGCTCCGTTGAGAT
TGCCGATNCAACAAATCATGTTCTTGTGAAAATAATTTTTGCTGGTGGAA
ATGCTAGTGACGTTAATTTCAGCTCAGGTCGTTATTTCTCTGACGGTAAT
GACATTGGCTCTCGTCTNCCATTTGACGCTGGCTTTGAGGCAGTAGGACT
AATTGCAGCAGTTGGGGACTCTTGCCATAACGTGAAAGTGGGACTCCTGC
TGCCATCATGACTTTTGGGAGTATGCTGGATTTACAATGGGACCTCTAAA
CCATTCTTCCTGGGGAAGAACAAACCACAAAGTGGTGCCTGCTTACTCCG
GGCTA
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